Mercurial > repos > iuc > recentrifuge
comparison test-data/centrifuge_test/test2_csv.log @ 1:fe733f05c2f8 draft
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 9142693589056424fb64869b69dbc08b179f57ee
| author | iuc |
|---|---|
| date | Fri, 26 Aug 2022 10:57:30 +0000 |
| parents | 09b7b0b2e2c2 |
| children | 12f0968f171c |
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| 0:09b7b0b2e2c2 | 1:fe733f05c2f8 |
|---|---|
| 1 | 1 |
| 2 =-= /home/pierre/anaconda3/envs/rcf/bin/rcf =-= v1.8.1 - Mar 2022 =-= by Jose Manuel Martà =-= | 2 =-= /home/pierre/anaconda3/envs/__recentrifuge@1.9.1/bin/rcf =-= v1.9.1 - Jun 2022 =-= by Jose Manuel Martà =-= |
| 3 | 3 |
| 4 [90mCentrifuge .out files to analyze:[0m ['input_dir/centrifuge_out.out'] | |
| 4 [90mLoading NCBI nodes...[0m[92m OK! [0m | 5 [90mLoading NCBI nodes...[0m[92m OK! [0m |
| 5 [90mLoading NCBI names...[0m[92m OK! [0m | 6 [90mLoading NCBI names...[0m[92m OK! [0m |
| 6 [90mBuilding dict of parent to children taxa...[0m[92m OK! [0m | 7 [90mBuilding dict of parent to children taxa...[0m[92m OK! [0m |
| 7 [90m | 8 [90m |
| 8 Please, wait, processing files in parallel... | 9 Please, wait, processing files in parallel... |
| 9 [0m | 10 [0m |
| 10 [90mLoading output file centrifuge.out... [0m[92mOK! | 11 [90mLoading output file input_dir/centrifuge_out.out... [0m[92mOK! |
| 11 [0m[90m Seqs read: [0m10_999 [90m[[0m4.22 Mnt[90m] | 12 [0m[90m Seqs read: [0m10_999 [90m[[0m4.22 Mnt[90m] |
| 12 [0m[90m Seqs clas: [0m10_354 [90m([0m5.86%[90m unclassified) | 13 [0m[90m Seqs clas: [0m10_354 [90m([0m5.86%[90m unclassified) |
| 13 [0m[90m Seqs pass: [0m10_354 [90m([0m0.00%[90m rejected) | 14 [0m[90m Seqs pass: [0m10_354 [90m([0m0.00%[90m rejected) |
| 14 [0m[90m Scores: min = [0m23.0[90m, max = [0m400.1[90m, avr = [0m190.7 | 15 [0m[90m Scores: min = [0m23.0[90m, max = [0m400.1[90m, avr = [0m190.7 |
| 15 [90m Length: min = [0m70 nt[90m, max = [0m602 nt[90m, avr = [0m387 nt | 16 [90m Length: min = [0m70 nt[90m, max = [0m602 nt[90m, avr = [0m387 nt |
| 17 [90mBuilding from raw data with mintaxa = [0m4[90m ... | 18 [90mBuilding from raw data with mintaxa = [0m4[90m ... |
| 18 [0m[90m Check for more seqs lost ([in/ex]clude affects)... [0m[94m | 19 [0m[90m Check for more seqs lost ([in/ex]clude affects)... [0m[94m |
| 19 Info:[0m 10279 [90madditional seqs discarded ([0m99.276% [90mof accepted) | 20 Info:[0m 10279 [90madditional seqs discarded ([0m99.276% [90mof accepted) |
| 20 [0m[93m | 21 [0m[93m |
| 21 Warning![0m 210 orphan taxids[90m (rerun with --debug for details) | 22 Warning![0m 210 orphan taxids[90m (rerun with --debug for details) |
| 22 [0mcentrifuge[94m sample [0m[92mOK! | 23 [0minput_dir/centrifuge_out[94m sample [0m[92mOK! |
| 23 [0m[90mLoad elapsed time: [0m0.0305[90m sec | 24 [0m[90mLoad elapsed time: [0m0.0337[90m sec |
| 24 [0m | 25 [0m |
| 25 [90m | 26 [90m |
| 26 Building the taxonomy multiple tree... [0m[92mOK![0m | 27 Building the taxonomy multiple tree... [0m[92mOK![0m |
| 27 [90mGenerating csv extra output ([0m[95m[test2_csv.rcf.]*.csv[0m[90m)... [0m[92mOK![0m | 28 [90mGenerating csv extra output ([0m[95m[output.rcf.]*.csv[0m[90m)... [0m[92mOK![0m |
| 28 [90mTotal elapsed time:[0m 00:00:00 | 29 [90mTotal elapsed time:[0m 00:00:00 |