recentrifuge: test-data/centrifuge_test/test2

annotate test-data/centrifuge_test/test2_csv.log @ 1:fe733f05c2f8 draft

planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 9142693589056424fb64869b69dbc08b179f57ee

author	iuc
date	Fri, 26 Aug 2022 10:57:30 +0000
parents	09b7b0b2e2c2
children	12f0968f171c

rev	line source
0 09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee iuc parents: diff changeset	1
1 fe733f05c2f8 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 9142693589056424fb64869b69dbc08b179f57ee iuc parents: 0 diff changeset	2 =-= /home/pierre/anaconda3/envs/__recentrifuge@1.9.1/bin/rcf =-= v1.9.1 - Jun 2022 =-= by Jose Manuel Martí =-=
0 09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee iuc parents: diff changeset	3
1 fe733f05c2f8 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 9142693589056424fb64869b69dbc08b179f57ee iuc parents: 0 diff changeset	4 [90mCentrifuge .out files to analyze:[0m ['input_dir/centrifuge_out.out']
0 09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee iuc parents: diff changeset	5 [90mLoading NCBI nodes...[0m[92m OK! [0m
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee iuc parents: diff changeset	6 [90mLoading NCBI names...[0m[92m OK! [0m
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee iuc parents: diff changeset	7 [90mBuilding dict of parent to children taxa...[0m[92m OK! [0m
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee iuc parents: diff changeset	8 [90m
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee iuc parents: diff changeset	9 Please, wait, processing files in parallel...
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee iuc parents: diff changeset	10 [0m
1 fe733f05c2f8 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 9142693589056424fb64869b69dbc08b179f57ee iuc parents: 0 diff changeset	11 [90mLoading output file input_dir/centrifuge_out.out... [0m[92mOK!
0 09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee iuc parents: diff changeset	12 [0m[90m Seqs read: [0m10_999 [90m[[0m4.22 Mnt[90m]
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee iuc parents: diff changeset	13 [0m[90m Seqs clas: [0m10_354 [90m([0m5.86%[90m unclassified)
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee iuc parents: diff changeset	14 [0m[90m Seqs pass: [0m10_354 [90m([0m0.00%[90m rejected)
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee iuc parents: diff changeset	15 [0m[90m Scores: min = [0m23.0[90m, max = [0m400.1[90m, avr = [0m190.7
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee iuc parents: diff changeset	16 [90m Length: min = [0m70 nt[90m, max = [0m602 nt[90m, avr = [0m387 nt
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee iuc parents: diff changeset	17 [90m TaxIds: by classifier = [0m215[90m, by filter = [0m215
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee iuc parents: diff changeset	18 [90mBuilding from raw data with mintaxa = [0m4[90m ...
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee iuc parents: diff changeset	19 [0m[90m Check for more seqs lost ([in/ex]clude affects)... [0m[94m
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee iuc parents: diff changeset	20 Info:[0m 10279 [90madditional seqs discarded ([0m99.276% [90mof accepted)
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee iuc parents: diff changeset	21 [0m[93m
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee iuc parents: diff changeset	22 Warning![0m 210 orphan taxids[90m (rerun with --debug for details)
1 fe733f05c2f8 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 9142693589056424fb64869b69dbc08b179f57ee iuc parents: 0 diff changeset	23 [0minput_dir/centrifuge_out[94m sample [0m[92mOK!
fe733f05c2f8 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 9142693589056424fb64869b69dbc08b179f57ee iuc parents: 0 diff changeset	24 [0m[90mLoad elapsed time: [0m0.0337[90m sec
0 09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee iuc parents: diff changeset	25 [0m
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee iuc parents: diff changeset	26 [90m
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee iuc parents: diff changeset	27 Building the taxonomy multiple tree... [0m[92mOK![0m
1 fe733f05c2f8 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 9142693589056424fb64869b69dbc08b179f57ee iuc parents: 0 diff changeset	28 [90mGenerating csv extra output ([0m[95m[output.rcf.]*.csv[0m[90m)... [0m[92mOK![0m
0 09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee iuc parents: diff changeset	29 [90mTotal elapsed time:[0m 00:00:00

Mercurial > repos > iuc > recentrifuge

annotate test-data/centrifuge_test/test2_csv.log @ 1:fe733f05c2f8 draft