Mercurial > repos > iuc > rna_starsolo
changeset 7:e403d27e8f24 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit a8e319862d723654c372a6d71e5de76e052586a9"
| author | iuc |
|---|---|
| date | Wed, 05 Aug 2020 09:41:22 -0400 |
| parents | 178bdbdb6d24 |
| children | 00fbfac99d39 |
| files | macros.xml rg_rnaStarSolo.xml test-data/41737_R1_sub240k.fastq.gz test-data/41737_R2_sub240k.fastq.gz test-data/737K-august-2016.small.txt.gz test-data/SNORD83B.22.fa test-data/SNORD83B.22.gtf test-data/filtered.barcodes.txt test-data/filtered3.Homo_sapiens.GRCh38.100.chr21.gtf test-data/filtered3.Homo_sapiens.GRCh38.dna.chromosome.21.fa.gz test-data/filtered3.bam test-data/pbmc_1k_v2_L001.R1.10k.fastq.gz test-data/pbmc_1k_v2_L001.R2.10k.fastq.gz test-data/rnastar_index2_versioned.loc test-data/rnastar_index2x_versioned.loc test-data/test-cache/tophat-test/Log.out test-data/test-cache/tophat-test/genomeParameters.txt tool-data/rnastar_index2_versioned.loc.sample tool-data/rnastar_index2x_versioned.loc.sample tool_data_table_conf.xml.sample tool_data_table_conf.xml.test |
| diffstat | 21 files changed, 1179 insertions(+), 291 deletions(-) [+] |
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--- a/macros.xml Thu Nov 28 15:55:47 2019 -0500 +++ b/macros.xml Wed Aug 05 09:41:22 2020 -0400 @@ -5,7 +5,7 @@ the index versions in sync, but you should manually adjust the +galaxy version number. --> <!-- STAR version to be used --> - <token name="@VERSION@">2.7.2b</token> + <token name="@VERSION@">2.7.5b</token> <!-- STAR index version compatible with this version of STAR This is the STAR version that introduced the index structure expected by the current version. @@ -13,7 +13,8 @@ STAR -h | grep versionGenome or by looking for the versionGenome parameter in source/parametersDefault of STAR's source code --> - <token name="@IDX_VERSION@">2.7.1a</token> + <token name="@IDX_VERSION@">2.7.4a</token> + <token name="@IDX_DATA_TABLE@">rnastar_index2x_versioned</token> <xml name="requirements"> <requirements> @@ -27,7 +28,7 @@ <param argument="--genomeDir" name="genomeDir" type="select" label="Select reference genome" help="If your genome of interest is not listed, contact the Galaxy team"> - <options from_data_table="rnastar_index2_versioned"> + <options from_data_table="@IDX_DATA_TABLE@"> <filter type="static_value" column="4" value="@WITH_GENE_MODEL@" /> <filter type="static_value" column="5" value="@IDX_VERSION@" /> <filter type="sort_by" column="2" /> @@ -53,7 +54,7 @@ <conditional name="refGenomeSource.geneSource"> <when value="indexed"> <action type="metadata" name="dbkey"> - <option type="from_data_table" name="rnastar_index2_versioned" column="1" offset="0"> + <option type="from_data_table" name="@IDX_DATA_TABLE@" column="1" offset="0"> <filter type="param_value" column="0" value="#" compare="startswith" keep="False"/> <filter type="param_value" ref="refGenomeSource.GTFconditional.genomeDir" column="0"/> </option> @@ -76,10 +77,21 @@ --genomeDir 'tempstargenomedir' --genomeFastaFiles '${refGenomeSource.genomeFastaFiles}' ## Handle difference between indices with/without annotations - #if str($refGenomeSource.GTFconditional.GTFselect) == 'with-gtf': - --sjdbOverhang '${refGenomeSource.GTFconditional.sjdbOverhang}' - --sjdbGTFfile '${refGenomeSource.GTFconditional.sjdbGTFfile}' - #if str($refGenomeSource.GTFconditional.sjdbGTFfile.ext) == 'gff3': + #if 'GTFconditional' in $refGenomeSource: + ## GTFconditional exists only in STAR, but not STARsolo + #if str($refGenomeSource.GTFconditional.GTFselect) == 'with-gtf': + --sjdbOverhang '${refGenomeSource.GTFconditional.sjdbOverhang}' + --sjdbGTFfile '${refGenomeSource.GTFconditional.sjdbGTFfile}' + #if str($refGenomeSource.GTFconditional.sjdbGTFfile.ext) == 'gff3': + --sjdbGTFtagExonParentTranscript Parent + #end if + #end if + #else: + ## ref genome selection is less complex for STARsolo cause + ## with-gtf is mandatory there + --sjdbOverhang '${refGenomeSource.sjdbOverhang}' + --sjdbGTFfile '${refGenomeSource.sjdbGTFfile}' + #if str($refGenomeSource.sjdbGTFfile.ext) == 'gff3': --sjdbGTFtagExonParentTranscript Parent #end if #end if @@ -110,6 +122,13 @@ #end if #end if ]]></token> + <xml name="ref_selection"> + <param argument="--genomeFastaFiles" type="data" format="fasta" label="Select a reference genome" /> + <!-- Currently, this parameter is not exposed in the wrapper, + but used only in the tests to avoid excessive index sizes for + the tiny test genomes. --> + <param name="genomeSAindexNbases" type="hidden" value="" /> + </xml> <xml name="stdio" > <stdio> <regex match="FATAL error" source="both" level="fatal"/> @@ -119,48 +138,4 @@ <yield /> </stdio> </xml> - <xml name="refgenomehandling" > - <conditional name="refGenomeSource"> - <param name="geneSource" type="select" label="Custom or built-in reference genome" help="Built-ins were indexed using default options"> - <option value="indexed" selected="true">Use a built-in index</option> - <option value="history">Use reference genome from history and create temporary index</option> - </param> - <when value="indexed"> - <conditional name="GTFconditional"> - <param name="GTFselect" type="select" - label="Reference genome with or without an annotation" - help="Select the '... with builtin gene-model' option to select from the list of available indexes that were built with splice junction information. Select the '... without builtin gene-model' option to select from the list of available indexes without annotated splice junctions."> - <option value="without-gtf" selected='true'>use genome reference without builtin gene-model</option> - <option value="with-gtf">use genome reference with builtin gene-model</option> - </param> - <when value="with-gtf"> - <expand macro="index_selection" with_gene_model="1" /> - </when> - <when value="without-gtf"> - <expand macro="index_selection" with_gene_model="0" /> - <expand macro="@SJDBOPTIONS@" /> - </when> - </conditional> - </when> - <when value="history"> - <param argument="--genomeFastaFiles" type="data" format="fasta" label="Select a reference genome" /> - <!-- Currently, this parameter is not exposed in the wrapper, - but used only in the tests to avoid excessive index sizes for - the tiny test genomes. --> - <param name="genomeSAindexNbases" type="hidden" value="" /> - <conditional name="GTFconditional"> - <param name="GTFselect" type="select" - label="Build index with our without known splice junctions annotation" - help="To build an index with known splice junctions annotated, you will have to provide a GTF or GFF3 dataset that describes the gene models (the location of genes, transcripts and exons) known for the reference genome."> - <option value="without-gtf">build index without gene-model</option> - <option value="with-gtf">build index with gene-model</option> - </param> - <when value="with-gtf"> - <expand macro="@SJDBOPTIONS@" optional="false"/> - </when> - <when value="without-gtf" /> - </conditional> - </when> - </conditional> - </xml> </macros>
--- a/rg_rnaStarSolo.xml Thu Nov 28 15:55:47 2019 -0500 +++ b/rg_rnaStarSolo.xml Wed Aug 05 09:41:22 2020 -0400 @@ -1,8 +1,7 @@ -<tool id="rna_starsolo" name="RNA STARSolo" version="@VERSION@@WRAPPER@" profile="17.01"> +<tool id="rna_starsolo" name="RNA STARSolo" version="@VERSION@" profile="17.01"> <description>mapping, demultiplexing and gene quantification for single cell RNA-seq</description> <macros> <import>macros.xml</import> - <token name="@WRAPPER@">1</token> </macros> <expand macro="requirements"/> <expand macro="stdio" > @@ -14,52 +13,34 @@ STAR @REFGENOMEHANDLING@ + --readFilesIn ## Check that the input pairs are of the same type ## otherwise STARsolo will run for a long time and then error out. ## We consume either repeats of two inputs R1 + R2 ## or a collection of paired reads. - #try - #set $last = None - #for $x in $input_types.input_repeats: - #if str($input_types.use) == "repeat": - #set $r1 = $x.input1 - #set $r2 = $x.input2 - #elif str($input_types.use) == "list_paired": - #set $r1 = $x.forward - #set $r2 = $x.reverse - #else - Wrong Type - #stop - #end if - + #if str($input_types.use) == "repeat": + #set $reads1 = [] + #set $reads2 = [] + #for $r1, $r2 in zip($input_types.input1, $input_types.input2): #assert $r1.datatype == $r2.datatype - - ## Test that all pairs are of the same type - #if $last: - #assert $last.datatype == $r1.datatype - #end if - #set $last = $r1 + #silent $reads1.append(str($r1)) + #silent $reads2.append(str($r2)) #end for - #except AssertionError - Input types are not the same! - #stop - #end try + #set $reads1 = ','.join($reads1) + #set $reads2 = ','.join($reads2) + #elif str($input_types.use) == "list_paired": + #set $r1 = $input_types.input_collection.forward + #set $r2 = $input_types.input_collection.reverse + #set $reads1 = $r1 + #set $reads2 = $r2 + #end if ## cDNA sequence(s) [R2] always go first, then barcode(s) [R1] ## see: Section 3.1 of STAR manual for multiple inputs, and Section 13 for STARsolo inputs - #if str($input_types.use) == "repeat": - #set $reads2 = ','.join([ '%s' % $x.input2 for $i,$x in enumerate($input_types.input_repeats)]) - #set $reads1 = ','.join([ '%s' % $x.input1 for $i,$x in enumerate($input_types.input_repeats)]) - #else if str($input_types.use) == "list_paired" - #set $reads2 = ','.join([ '%s' % $x.reverse for $i,$x in enumerate($input_types.input_repeats)]) - #set $reads1 = ','.join([ '%s' % $x.forward for $i,$x in enumerate($input_types.input_repeats)]) - #end if - - --readFilesIn $reads2 $reads1 - #if $last.is_of_type('fastq.gz', 'fastqsanger.gz'): + #if $r1.is_of_type('fastq.gz', 'fastqsanger.gz'): @FASTQ_GZ_OPTION@ #end if @@ -69,7 +50,7 @@ ## 1 - check length of barcode, 0 - do not check ## Good for checking custom chemistries --soloCBwhitelist '$soloCBwhitelist' - --soloBarcodeReadLength '$solo.soloBarcodeReadLength' + --soloBarcodeReadLength $solo.soloBarcodeReadLength #if str($solo.params.chemistry) == "CR2": --soloCBstart 1 @@ -82,34 +63,80 @@ --soloUMIstart 17 --soloUMIlen 12 #else if str($solo.params.chemistry) == "custom": - --soloCBstart '$solo.params.soloCBstart' - --soloCBlen '$solo.params.soloCBlen' - --soloUMIstart '$solo.params.soloUMIstart' - --soloUMIlen '$solo.params.soloUMIlen' + --soloCBstart $solo.params.soloCBstart + --soloCBlen $solo.params.soloCBlen + --soloUMIstart $solo.params.soloUMIstart + --soloUMIlen $solo.params.soloUMIlen #end if - --soloStrand '$solo.soloStrand' - --soloFeatures '$solo.soloFeatures' - --soloUMIdedup '$solo.soloUMIdedup' + --soloStrand $solo.soloStrand + --soloFeatures $solo.soloFeatures + --soloUMIdedup $solo.soloUMIdedup + --quantMode TranscriptomeSAM + --outSAMtype BAM Unsorted + + ## BAM sorting (logic copied from samtools_sort wrapper) + ## choosing BAM SortedByCoord appeared once to give fewer reads + ## than BAM Unsorted followed by a samtools sort + ## so better go with the latter? + + && + ##compute the number of ADDITIONAL threads to be used by samtools (-@) + addthreads=\${GALAXY_SLOTS:-2} && (( addthreads-- )) && + ##compute the number of memory available to samtools sort (-m) + ##use only 75% of available: https://github.com/samtools/samtools/issues/831 + addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} && + ((addmemory=addmemory*75/100)) && + samtools sort -@ \$addthreads -m \$addmemory"M" -T "\${TMPDIR:-.}" -O bam -o '$output_BAM' Aligned.out.bam + ]]></command> <inputs> <conditional name="input_types" > <param name="use" type="select" label="Input Type" > - <option value="repeat" >Single files</option> - <option value="list_paired" >List of Pairs</option> + <option value="repeat" >Separate barcode and cDNA reads</option> + <option value="list_paired" >Paired collection of barcode and cDNA reads</option> </param> <when value="repeat"> - <repeat name="input_repeats" title="Input Pairs" min="1" > - <param format="fastq,fasta,fastq.gz,fastqsanger.gz" name="input1" type="data" label="RNA-Seq FASTQ/FASTA file, Barcode reads"/> - <param format="fastq,fasta,fastq.gz,fastqsanger.gz" name="input2" type="data" label="RNA-Seq FASTQ/FASTA file, cDNA reads"/> - </repeat> + <param format="fastq,fasta,fastq.gz,fastqsanger.gz" name="input1" type="data" multiple="true" + label="RNA-Seq FASTQ/FASTA file, Barcode reads" /> + <param format="fastq,fasta,fastq.gz,fastqsanger.gz" name="input2" type="data" multiple="true" + label="RNA-Seq FASTQ/FASTA file, cDNA reads"/> </when> <when value="list_paired"> - <param name="input_repeats" collection_type="paired" type="data_collection" format="fastq,fasta,fastq.gz,fastqsanger.gz" label="Collection of Pairs" /> + <param name="input_collection" collection_type="paired" type="data_collection" format="fastq,fasta,fastq.gz,fastqsanger.gz" label="Collection of Pairs" /> </when> </conditional> <param format="txt,tsv" argument="--soloCBwhitelist" type="data" label="RNA-Seq Cell Barcode Whitelist" /> - <expand macro="refgenomehandling" /> + + <!-- Genome source. --> + <conditional name="refGenomeSource"> + <param name="geneSource" type="select" label="Custom or built-in reference genome" help="Built-ins were indexed using default options"> + <option value="indexed" selected="true">Use a built-in index</option> + <option value="history">Use reference genome from history and create temporary index</option> + </param> + <when value="indexed"> + <conditional name="GTFconditional"> + <param name="GTFselect" type="select" + label="Reference genome with or without an annotation" + help="Select the '... with builtin gene-model' option to select from the list of available indexes that were built with splice junction information. Select the '... without builtin gene-model' option to select from the list of available indexes without annotated splice junctions, and provide your own splice junction annonations."> + <option value="without-gtf" selected='true'>use genome reference without builtin gene-model</option> + <option value="with-gtf">use genome reference with builtin gene-model</option> + </param> + <when value="with-gtf"> + <expand macro="index_selection" with_gene_model="1" /> + </when> + <when value="without-gtf"> + <expand macro="index_selection" with_gene_model="0" /> + <expand macro="@SJDBOPTIONS@" optional="false" /> + </when> + </conditional> + </when> + <when value="history"> + <expand macro="ref_selection" /> + <expand macro="@SJDBOPTIONS@" optional="false"/> + </when> + </conditional> + <section name="solo" title="Advanced Settings" expanded="true"> <conditional name="params"> <param name="chemistry" type="select" label="Configure Chemistry Options"> @@ -148,82 +175,102 @@ <data format="txt" name="output_log" label="${tool.name} on ${on_string}: log" from_work_dir="Log.final.out"> <expand macro="dbKeyActions" /> </data> - <data format="tsv" name="output_genes" label="${tool.name} on ${on_string}: Genes" from_work_dir="Solo.out/genes.tsv" /> - <data format="tsv" name="output_barcodes" label="${tool.name} on ${on_string}: Barcodes" from_work_dir="Solo.out/barcodes.tsv" /> - <data format="mtx" name="output_matrix" label="${tool.name} on ${on_string}: Matrix Gene Counts" from_work_dir="Solo.out/matrix.mtx" > + <data format="tsv" name="output_genes" label="${tool.name} on ${on_string}: Genes" + from_work_dir="Solo.out/Gene/filtered/features.tsv" /> + <data format="tsv" name="output_barcodes" label="${tool.name} on ${on_string}: Barcodes" + from_work_dir="Solo.out/Gene/filtered/barcodes.tsv" /> + <data format="mtx" name="output_matrix" label="${tool.name} on ${on_string}: Matrix Gene Counts" + from_work_dir="Solo.out/Gene/filtered/matrix.mtx" > <filter>solo['soloFeatures'] == "Gene" </filter> + <expand macro="dbKeyActions" /> </data> - <data format="mtx" name="output_matrixSJ" label="${tool.name} on ${on_string}: Matrix Splice Junction Counts" from_work_dir="Solo.out/matrixSJ.mtx" > + <data format="mtx" name="output_matrixSJ" label="${tool.name} on ${on_string}: Matrix Splice Junction Counts" + from_work_dir="Solo.out/Gene/filtered/matrixSJ.mtx" > <filter>solo['soloFeatures'] == "SJ" </filter> + <expand macro="dbKeyActions" /> </data> - <data format="mtx" name="output_matrixGeneFull" label="${tool.name} on ${on_string}: Matrix Full Gene Counts" from_work_dir="Solo.out/matrixGeneFull.mtx" > + <data format="mtx" name="output_matrixGeneFull" label="${tool.name} on ${on_string}: Matrix Full Gene Counts" + from_work_dir="Solo.out/Gene/filtered/matrixGeneFull.mtx" > <filter>solo['soloFeatures'] == "GeneFull" </filter> + <expand macro="dbKeyActions" /> + </data> + <data format="bam" name="output_BAM" label="${tool.name} on ${on_string}: Alignments" > + <expand macro="dbKeyActions" /> </data> - <data format="txt" name="output_stats" label="${tool.name} on ${on_string}: Feature Statistic Summaries" from_work_dir="Solo.out/Gene.stats" /> + <data format="txt" name="output_stats" label="${tool.name} on ${on_string}: Feature Statistic Summaries" + from_work_dir="Solo.out/Gene/Features.stats" /> </outputs> + <!-- Generating test data that is big enough for STARsolo to detect and small enough + for Galaxy to test requires careful modification of input FASTA and GTF data, + where the length of FASTA cannot exceed the largest position in the GTF file, + regardless of the FASTA starting sequence position. + + A full writeup of how to subset single cell data for use in STARsolo is given + here: https://gist.github.com/mtekman/149a7c52fd73e5d8ebe49f5a27b0743d + --> <tests> - <test expect_num_outputs="5"> + <test expect_num_outputs="6"> <conditional name="input_types"> <param name="use" value="repeat" /> - <repeat name="input_repeats" > - <param name="input1" value="41737_R1_sub240k.fastq.gz" ftype="fastqsanger.gz" /> - <param name="input2" value="41737_R2_sub240k.fastq.gz" ftype="fastqsanger.gz" /> - </repeat> + <param name="input1" value="pbmc_1k_v2_L001.R1.10k.fastq.gz" ftype="fastqsanger.gz" /> + <param name="input2" value="pbmc_1k_v2_L001.R2.10k.fastq.gz" ftype="fastqsanger.gz" /> </conditional> - <param name="soloCBwhitelist" value="737K-august-2016.small.txt.gz" /> + <param name="soloCBwhitelist" value="filtered.barcodes.txt" /> <conditional name="refGenomeSource"> <param name="geneSource" value="history" /> - <param name="genomeFastaFiles" value="SNORD83B.22.fa" /> + <param name="genomeFastaFiles" value="filtered3.Homo_sapiens.GRCh38.dna.chromosome.21.fa.gz" /> <param name="genomeSAindexNbases" value="4" /> - <conditional name="GTFconditional"> - <param name="GTFselect" value="with-gtf" /> - <param name="sjdbOverhang" value="75"/> - <param name="sjdbGTFfile" value="SNORD83B.22.gtf" ftype="gtf"/> - </conditional> + <param name="sjdbOverhang" value="100" /> + <param name="sjdbGTFfile" value="filtered3.Homo_sapiens.GRCh38.100.chr21.gtf" ftype="gtf"/> </conditional> <section name="solo" > <conditional name="params"> - <param name="chemistry" value="CR2" /> + <param name="chemistry" value="CR3" /> </conditional> <param name="soloStrand" value="Forward" /> <param name="soloFeatures" value="Gene" /> <param name="soloUMIdedup" value="1MM_All" /> </section> + <output name="output_barcodes" > + <assert_contents> + <!-- first and last line --> + <has_line line="ACACCGGTCTAACGGT" /> + <has_line line="TTCTCAATCCACGTTC" /> + </assert_contents> + </output> <output name="output_genes"> <assert_contents> - <has_line_matching expression="ENSG00000209480\sSNORD83B" /> + <has_line_matching expression="ENSG00000279493\s+FP565260\.4\s+Gene\s+Expression" /> + <has_line_matching expression="ENSG00000279064\s+FP236315\.1\s+Gene\s+Expression" /> </assert_contents> </output> <output name="output_matrix" > <assert_contents> - <has_line_matching expression="1\s137281\s0" /> + <has_line_matching expression="14\s+7\s+7" /> + <has_line_matching expression="4\s+7\s+1" /> </assert_contents> </output> <output name="output_stats" > <assert_contents> - <has_line_matching expression="\s+nNoFeature\s+3253" /> - <has_line_matching expression="\s+nUMIs\s+0" /> + <has_line_matching expression="\s+nUnmapped\s+5823" /> + <has_line_matching expression="\s+nUMIs\s+8" /> </assert_contents> </output> + <output name="output_BAM" value="filtered3.bam" compare="sim_size" delta="600" /> </test> - <test expect_num_outputs="5"> + <test expect_num_outputs="6"><!-- same as above, but using custom --> <conditional name="input_types"> <param name="use" value="repeat" /> - <repeat name="input_repeats" > - <param name="input1" value="41737_R1_sub240k.fastq.gz" ftype="fastqsanger.gz" /> - <param name="input2" value="41737_R2_sub240k.fastq.gz" ftype="fastqsanger.gz" /> - </repeat> + <param name="input1" value="pbmc_1k_v2_L001.R1.10k.fastq.gz" ftype="fastqsanger.gz" /> + <param name="input2" value="pbmc_1k_v2_L001.R2.10k.fastq.gz" ftype="fastqsanger.gz" /> </conditional> - <param name="soloCBwhitelist" value="737K-august-2016.small.txt.gz" /> + <param name="soloCBwhitelist" value="filtered.barcodes.txt" /> <conditional name="refGenomeSource"> <param name="geneSource" value="history" /> - <param name="genomeFastaFiles" value="SNORD83B.22.fa" /> + <param name="genomeFastaFiles" value="filtered3.Homo_sapiens.GRCh38.dna.chromosome.21.fa.gz" /> <param name="genomeSAindexNbases" value="4" /> - <conditional name="GTFconditional"> - <param name="GTFselect" value="with-gtf" /> - <param name="sjdbOverhang" value="75" /> - <param name="sjdbGTFfile" value="SNORD83B.22.gtf" ftype="gtf"/> - </conditional> + <param name="sjdbOverhang" value="100" /> + <param name="sjdbGTFfile" value="filtered3.Homo_sapiens.GRCh38.100.chr21.gtf" ftype="gtf"/> </conditional> <section name="solo" > <conditional name="params"> @@ -231,127 +278,108 @@ <param name="soloCBstart" value="1" /> <param name="soloCBlen" value="16" /> <param name="soloUMIstart" value="17" /> - <param name="soloUMIlen" value="10" /> + <param name="soloUMIlen" value="12" /> </conditional> <param name="soloStrand" value="Forward" /> - <param name="soloFeatures" value="GeneFull" /> - <param name="soloUMIdedup" value="1MM_Directional" /> - </section> - <output name="output_barcodes" > - <assert_contents> - <has_line line="TTTGTCATCTTAGAGC" /> - <has_line line="TTTGTCATCTTTCCTC" /> - </assert_contents> - </output> - </test> - <test expect_num_outputs="5"> - <!-- Multiple repeats test --> - <conditional name="input_types"> - <param name="use" value="repeat" /> - <repeat name="input_repeats" > - <param name="input1" value="41737_R1_sub240k.fastq.gz" ftype="fastqsanger.gz" /> - <param name="input2" value="41737_R2_sub240k.fastq.gz" ftype="fastqsanger.gz" /> - </repeat> - <repeat name="input_repeats" > - <param name="input1" value="41737_R1_sub240k.fastq.gz" ftype="fastqsanger.gz" /> - <param name="input2" value="41737_R2_sub240k.fastq.gz" ftype="fastqsanger.gz" /> - </repeat> - <repeat name="input_repeats" > - <param name="input1" value="41737_R1_sub240k.fastq.gz" ftype="fastqsanger.gz" /> - <param name="input2" value="41737_R2_sub240k.fastq.gz" ftype="fastqsanger.gz" /> - </repeat> - </conditional> - <param name="soloCBwhitelist" value="737K-august-2016.small.txt.gz" /> - <conditional name="refGenomeSource"> - <param name="geneSource" value="history" /> - <param name="genomeFastaFiles" value="SNORD83B.22.fa" /> - <param name="genomeSAindexNbases" value="4" /> - <conditional name="GTFconditional"> - <param name="GTFselect" value="with-gtf" /> - <param name="sjdbOverhang" value="75" /> - <param name="sjdbGTFfile" value="SNORD83B.22.gtf" ftype="gtf"/> - </conditional> - </conditional> - <section name="solo" > - <conditional name="params"> - <param name="chemistry" value="custom" /> - <param name="soloCBstart" value="1" /> - <param name="soloCBlen" value="16" /> - <param name="soloUMIstart" value="17" /> - <param name="soloUMIlen" value="10" /> - </conditional> - <param name="soloStrand" value="Forward" /> - <param name="soloFeatures" value="GeneFull" /> - <param name="soloUMIdedup" value="1MM_Directional" /> + <param name="soloFeatures" value="Gene" /> + <param name="soloUMIdedup" value="1MM_All" /> </section> <output name="output_barcodes" > <assert_contents> - <has_line line="TTTGTCATCTTAGAGC" /> - <has_line line="TTTGTCATCTTTCCTC" /> + <has_line line="ACACCGGTCTAACGGT" /> + <has_line line="TTCTCAATCCACGTTC" /> + </assert_contents> + </output> + <output name="output_genes"> + <assert_contents> + <has_line_matching expression="ENSG00000279493\s+FP565260\.4\s+Gene\s+Expression" /> + <has_line_matching expression="ENSG00000279064\s+FP236315\.1\s+Gene\s+Expression" /> + </assert_contents> + </output> + <output name="output_matrix" > + <assert_contents> + <has_line_matching expression="14\s+7\s+7" /> + <has_line_matching expression="4\s+7\s+1" /> + </assert_contents> + </output> + <output name="output_stats" > + <assert_contents> + <has_line_matching expression="\s+nUnmapped\s+5823" /> + <has_line_matching expression="\s+nUMIs\s+8" /> </assert_contents> </output> + <output name="output_BAM" value="filtered3.bam" compare="sim_size" delta="600" /> </test> - <test expect_num_outputs="5"> - <!-- Same as the test before but with a collection of pairs --> + <test expect_num_outputs="6"><!-- Multiple repeats test --> + <conditional name="input_types"> + <param name="use" value="repeat" /> + <param name="input1" value="pbmc_1k_v2_L001.R1.10k.fastq.gz,pbmc_1k_v2_L001.R1.10k.fastq.gz,pbmc_1k_v2_L001.R1.10k.fastq.gz" ftype="fastqsanger.gz" /> + <param name="input2" value="pbmc_1k_v2_L001.R2.10k.fastq.gz,pbmc_1k_v2_L001.R2.10k.fastq.gz,pbmc_1k_v2_L001.R2.10k.fastq.gz" ftype="fastqsanger.gz" /> + </conditional> + <param name="soloCBwhitelist" value="filtered.barcodes.txt" /> + <conditional name="refGenomeSource"> + <param name="geneSource" value="history" /> + <param name="genomeFastaFiles" value="filtered3.Homo_sapiens.GRCh38.dna.chromosome.21.fa.gz" /> + <param name="genomeSAindexNbases" value="4" /> + <param name="sjdbOverhang" value="100" /> + <param name="sjdbGTFfile" value="filtered3.Homo_sapiens.GRCh38.100.chr21.gtf" ftype="gtf"/> + </conditional> + <section name="solo" > + <conditional name="params"> + <param name="chemistry" value="CR3" /> + </conditional> + <param name="soloStrand" value="Forward" /> + <param name="soloFeatures" value="Gene" /> + <param name="soloUMIdedup" value="1MM_All" /> + </section> + <output name="output_barcodes" > + <assert_contents> + <has_line line="ACACCGGTCTAACGGT" /> + <has_line line="TTCTCAATCCACGTTC" /> + </assert_contents> + </output> + <!-- BAM output is huge, we don't need to test here --> + </test> + <test expect_num_outputs="6"> + <!-- Test with paired collection --> <conditional name="input_types"> <param name="use" value="list_paired" /> - <param name="input_repeats" > - <collection type="list:paired"> - <element name="Pair1"> - <collection type="paired"> - <element name="forward" value="41737_R1_sub240k.fastq.gz" ftype="fastqsanger.gz" /> - <element name="reverse" value="41737_R2_sub240k.fastq.gz" ftype="fastqsanger.gz" /> - </collection> - </element> - <element name="Pair2"> - <collection type="paired"> - <element name="forward" value="41737_R1_sub240k.fastq.gz" ftype="fastqsanger.gz" /> - <element name="reverse" value="41737_R2_sub240k.fastq.gz" ftype="fastqsanger.gz" /> - </collection> - </element> - <!-- Planemo does not support more than 2 elements in a list of pairs --> - <!-- <element name="Pair3"> --> - <!-- <element name="forward" value="41737_R1_sub240k.fastq.gz" ftype="fastqsanger.gz" /> --> - <!-- <element name="reverse" value="41737_R2_sub240k.fastq.gz" ftype="fastqsanger.gz" /> --> - <!-- </element> --> + <param name="input_collection" > + <collection type="paired"> + <element name="forward" value="pbmc_1k_v2_L001.R1.10k.fastq.gz" ftype="fastqsanger.gz" /> + <element name="reverse" value="pbmc_1k_v2_L001.R2.10k.fastq.gz" ftype="fastqsanger.gz" /> </collection> </param> </conditional> - <param name="soloCBwhitelist" value="737K-august-2016.small.txt.gz" /> + <param name="soloCBwhitelist" value="filtered.barcodes.txt" /> <conditional name="refGenomeSource"> <param name="geneSource" value="history" /> - <param name="genomeFastaFiles" value="SNORD83B.22.fa" /> + <param name="genomeFastaFiles" value="filtered3.Homo_sapiens.GRCh38.dna.chromosome.21.fa.gz" /> <param name="genomeSAindexNbases" value="4" /> - <conditional name="GTFconditional"> - <param name="GTFselect" value="with-gtf" /> - <param name="sjdbOverhang" value="75" /> - <param name="sjdbGTFfile" value="SNORD83B.22.gtf" ftype="gtf"/> - </conditional> + <param name="sjdbOverhang" value="100" /> + <param name="sjdbGTFfile" value="filtered3.Homo_sapiens.GRCh38.100.chr21.gtf" ftype="gtf"/> </conditional> <section name="solo" > <conditional name="params"> - <param name="chemistry" value="custom" /> - <param name="soloCBstart" value="1" /> - <param name="soloCBlen" value="16" /> - <param name="soloUMIstart" value="17" /> - <param name="soloUMIlen" value="10" /> + <param name="chemistry" value="CR3" /> </conditional> <param name="soloStrand" value="Forward" /> - <param name="soloFeatures" value="GeneFull" /> - <param name="soloUMIdedup" value="1MM_Directional" /> + <param name="soloFeatures" value="Gene" /> + <param name="soloUMIdedup" value="1MM_All" /> </section> <output name="output_barcodes" > <assert_contents> - <has_line line="TTTGTCATCTTAGAGC" /> - <has_line line="TTTGTCATCTTTCCTC" /> + <has_line line="ACACCGGTCTAACGGT" /> + <has_line line="TTCTCAATCCACGTTC" /> </assert_contents> </output> + <output name="output_BAM" value="filtered3.bam" compare="sim_size" delta="600" /> </test> </tests> <help><![CDATA[ **What it does** -**STARSolo** is a turnkey solution for analyzing droplet single cell RNA sequencing data (e.g. 10X Genomics Chromium System) built directly into STAR code. STARsolo inputs the raw FASTQ reads files, and performs the following operations: +**STARSolo** is a turnkey solution for analyzing droplet single cell RNA sequencing data (e.g. 10X Genomics Chromium System) built directly into STAR_ code. STARsolo takes raw FASTQ reads files as input, and performs the following operations: * Error correction and demultiplexing of cell barcodes using user-input whitelist * Mapping the reads to the reference genome using the standard STAR spliced read alignment algorithm @@ -360,6 +388,7 @@ STARsolo output is designed to be a drop-in replacement for 10X CellRanger gene quantification output. It follows CellRanger logic for cell barcode whitelisting and UMI deduplication, and produces nearly identical gene counts in the same format. At the same time STARsolo is 10 times faster than CellRanger. +.. _STAR: https://github.com/alexdobin/STAR ]]></help> <expand macro="citations"/> </tool>
--- a/test-data/SNORD83B.22.fa Thu Nov 28 15:55:47 2019 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,17 +0,0 @@ ->22 dna:chromosome chromosome:GRCh38:22:39313740:50818468:1 REF -CACACTCAAAGCAGCAAACAGCCCAGCAAGGCCAGACTGGGAATTTCCTCATCTCAGGAC -TTCAAAGCCAGTGTGAAAGGACTGCCAACACCCTCTCCTTCCTTTCCTCTCCCACCACAG -GGCCACCAGCGTCTGTGGCCTTGGATCCTCCCTCTACAAGAGCCCCCCCATGACAAGTCA -GGACCTGCCTCACCTTGCGGAGGGTGAGCACCCGCTTCTTGGTTCCCACCACACAGCCTT -TCAGCATGACAAAGTCATTGGTCACTTCACCATAGTGGACAAAGCCACCCTGGAAAACGA -GCATCGGATCAGCACAGGCCCAGGAGGGGATTGTCGTGCAGATGACCCCTCCAGGTTCAG -GCCCTCCCTGACCACAGGGCTGTTCTCAGAAGGAAGGCAACAAGGAACGGTTCCGCAGTC -TGTCTCGGGCGCTGTGCCCAGCGCACATTCCAGGCCTCATCACTGAACAGCTGAGCCTGA -GACCCCACTTCTCACCAGCCAACCCCGACGAGTGGACTCAGATGACAACATGCCACTTAC -AAGGGACACAGCTAGGTGTTGTGTTGGCTTCAGTTAACGATCCTGCTAGCAGCCCCTAGG -AAGCAGCCTATCCCCAAAAGCACGAGGCCTGGGATGGCCTCACAGAGCAGAACACCCATT -ACTTACCAGAGGGTTGATGCTCTTGTCAGATAGGTCATAGTCAGTGGAGGCATTGTTCTT -GATCAGCTTGCCGTCCTTGATAAGGTAGCCCTGGCCAATCTTATAAATCTGAATGAACAA -GAAGGGTGTAAGGCTGGGGCATTAGGGACAAATAACCCAGACATGCCAGTGTGCTGACCT -GCAAAGCACGCTAGAAGGCAGCTGAGGCCTCAGTCCCAGTCACAGCGTATCCCAAGGTCA -GAGCAAAAAGCTGGCTGGCCCTCCAGGTTCCTTTCTGTAAGGCGGCTGGGCTAAAACTAA \ No newline at end of file
--- a/test-data/SNORD83B.22.gtf Thu Nov 28 15:55:47 2019 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,8 +0,0 @@ -#!genome-build GRCh38.p12 -#!genome-version GRCh38 -#!genome-date 2013-12 -#!genome-build-accession NCBI:GCA_000001405.27 -#!genebuild-last-updated 2018-11 -22 ensembl gene 39313819 39313911 . - . gene_id "ENSG00000209480"; gene_version "1"; gene_name "SNORD83B"; gene_source "ensembl"; gene_biotype "snoRNA"; -22 ensembl transcript 39313819 39313911 . - . gene_id "ENSG00000209480"; gene_version "1"; transcript_id "ENST00000386745"; transcript_version "1"; gene_name "SNORD83B"; gene_source "ensembl"; gene_biotype "snoRNA"; transcript_name "SNORD83B-201"; transcript_source "ensembl"; transcript_biotype "snoRNA"; tag "basic"; transcript_support_level "NA"; -22 ensembl exon 39313819 39313911 . - . gene_id "ENSG00000209480"; gene_version "1"; transcript_id "ENST00000386745"; transcript_version "1"; exon_number "1"; gene_name "SNORD83B"; gene_source "ensembl"; gene_biotype "snoRNA"; transcript_name "SNORD83B-201"; transcript_source "ensembl"; transcript_biotype "snoRNA"; exon_id "ENSE00001501751"; exon_version "1"; tag "basic"; transcript_support_level "NA";
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/filtered.barcodes.txt Wed Aug 05 09:41:22 2020 -0400 @@ -0,0 +1,394 @@ +AAACCTGAGCGCTCCA +AAACGGGGTTTGTGTG +AAAGATGAGTACTTGC +AAAGCAATCCACGAAT +AAAGTAGGTAGCAAAT +AACCATGGTAGTACCT +AACCGCGCACATCTTT +AACCGCGCATGCCTAA +AACGTTGTCACAGTAC +AACTTTCTCTGTTTGT +AAGACCTTCAAACGGG +AAGGAGCAGTATCGAA +AAGGAGCAGTGGTAGC +AAGGAGCCAGCTTAAC +AAGGAGCTCTAAGCCA +ACACCAACAGCTGTAT +ACACCGGTCTAACGGT +ACATACGCACACCGCA +ACATACGTCTGCCCTA +ACATACGTCTGGCGAC +ACATCAGCAAACGCGA +ACATGGTCAGACTCGC +ACCAGTAAGCCTCGTG +ACCGTAACACAACGCC +ACCGTAAGTTCAGTAC +ACCGTAATCTTGGGTA +ACGAGCCCAAGAGTCG +ACGAGCCGTGCTGTAT +ACGAGGATCCTATGTT +ACGAGGATCTTTAGTC +ACGATACCAAAGTCAA +ACGCAGCTCACCGTAA +ACGCCGAAGCGCTTAT +ACGGAGACATCTATGG +ACGGCCACACCGAAAG +ACGGGCTGTCGGCACT +ACGGGTCCACACCGCA +ACTGAGTAGACGACGT +ACTGAGTTCGGAGCAA +ACTGAGTTCGTCTGAA +ACTGATGCAAGTTCTG +ACTGCTCGTGCAGGTA +ACTGTCCAGAGCTGCA +ACTGTCCTCCCACTTG +ACTTACTAGTTAGCGG +ACTTACTGTCCCTTGT +ACTTACTGTTACCAGT +ACTTTCAGTCTCCACT +ACTTTCAGTTAAAGTG +AGAATAGCAGCTGTAT +AGACGTTCAAGGCTCC +AGACGTTCAGACTCGC +AGACGTTGTCAAAGCG +AGACGTTTCAGTTTGG +AGAGCTTGTGACGCCT +AGAGTGGCAGATGAGC +AGAGTGGTCTTTAGGG +AGCATACCAGGGTATG +AGCCTAAGTTTAGGAA +AGCCTAATCCCGACTT +AGCGGTCAGTACATGA +AGCGGTCGTTCCACGG +AGCTCCTGTGTTTGGT +AGCTCTCAGCAGCCTC +AGCTCTCAGTGTTAGA +AGGCCACGTCAGCTAT +AGGCCACGTGCAGGTA +AGGCCACTCGTGGTCG +AGGGAGTAGGGTCTCC +AGGGAGTTCGATGAGG +AGGGATGGTTCAGGCC +AGGTCATAGCTCCTCT +AGGTCATCATCCGTGG +AGTAGTCAGGATGTAT +AGTAGTCCAATGGATA +AGTCTTTAGCAGGCTA +AGTGAGGCAATCGGTT +AGTGAGGTCGAACGGA +AGTGTCAAGGCGATAC +AGTGTCAGTTCCATGA +ATAACGCGTCGGCACT +ATAAGAGCACCAGGTC +ATAAGAGCACTTCTGC +ATAAGAGTCGGGAGTA +ATAGACCGTCCTAGCG +ATCACGACATATGCTG +ATCACGAGTCGACTGC +ATCATGGTCCGTACAA +ATCCACCCATTACGAC +ATCGAGTCAGGTCTCG +ATCGAGTGTTCCGTCT +ATCTGCCCACCAGGCT +ATCTGCCTCGCCATAA +ATGAGGGGTCTTCAAG +ATGTGTGAGGCTCAGA +ATTACTCAGACCCACC +ATTCTACAGTTTCCTT +ATTCTACTCATTGCGA +ATTTCTGTCTAACTCT +CAACCAAGTCCGTCAG +CAACTAGTCATGGTCA +CAAGAAAGTTCCGTCT +CAAGATCTCGTAGGTT +CAAGGCCCAATCTACG +CAAGGCCGTTATTCTC +CAAGTTGTCGTACGGC +CACAAACAGCCCAATT +CACACCTTCCCAACGG +CACACTCCATATGAGA +CACAGGCCAGTCCTTC +CACAGGCGTCATGCCG +CACAGTAAGCTGTCTA +CACAGTACAGTCGTGC +CACATAGTCGTACCGG +CACCACTAGTGTACCT +CACCACTCATACGCCG +CACCTTGAGTGTACGG +CAGAATCGTGAAGGCT +CAGAATCGTTACGACT +CAGAGAGTCTTGTACT +CAGCAGCGTGCAACGA +CAGCATAAGTGGCACA +CAGCCGAGTTCTGAAC +CAGCTAACACCTCGTT +CAGCTAAGTCAGTGGA +CATATTCCACCTCGTT +CATCAAGAGACAGAGA +CATCCACAGGCGACAT +CATCCACTCTGCCAGG +CATGCCTGTTCTCATT +CCAATCCAGACCTAGG +CCACCTACAGAAGCAC +CCACCTACAGCCTGTG +CCCAATCTCCTAAGTG +CCCAGTTAGTCCAGGA +CCCAGTTCAAGGTTCT +CCCATACAGCACCGCT +CCCATACGTACCGCTG +CCCATACGTGTTTGTG +CCCTCCTGTGTGCCTG +CCCTCCTTCGGTCCGA +CCGGTAGGTGCAGTAG +CCGGTAGTCTTCCTTC +CCGTACTCATGGTCTA +CCGTACTTCACTTCAT +CCTAAAGGTGAGGGAG +CCTACCAAGTGGGATC +CCTACCAGTAAGTGGC +CCTAGCTAGTCAAGCG +CCTAGCTGTTTGCATG +CGACCTTAGCCGTCGT +CGACCTTAGCGATCCC +CGACCTTTCTGTCAAG +CGACTTCGTTCGAATC +CGACTTCGTTGTGGCC +CGACTTCTCATATCGG +CGAGAAGTCTTGCATT +CGAGCACAGAAGGTTT +CGAGCACCAACGATGG +CGAGCACTCAGAAATG +CGAGCCACACCAGCAC +CGATCGGCATAACCTG +CGATGGCGTGCACGAA +CGATGGCGTGGTTTCA +CGCGGTACAGTATGCT +CGCGGTACATGGATGG +CGCTATCTCATCTGTT +CGCTGGAAGGAGCGTT +CGCTTCAAGTACGCGA +CGCTTCAAGTTCGCGC +CGCTTCACAATCAGAA +CGGACACTCTATCCCG +CGGACGTTCAGATAAG +CGGACGTTCTCATTCA +CGGACTGTCTAACTCT +CGGAGCTCACGAAGCA +CGGAGTCTCAACACCA +CGGGTCAGTCGACTAT +CGGGTCATCATCGCTC +CGGTTAAGTTCAGTAC +CGGTTAAGTTGTGGCC +CGTCACTTCGAATGGG +CGTGTCTAGACTGTAA +CGTGTCTAGATAGCAT +CGTTAGACAAGGGTCA +CGTTCTGGTACATGTC +CTAACTTGTATGCTTG +CTAACTTTCTAACCGA +CTAAGACGTTTGTGTG +CTACATTAGAAACGCC +CTACATTAGGTGACCA +CTACATTTCTCGAGTA +CTAGAGTAGACACGAC +CTAGAGTGTCGCGAAA +CTCACACCATTAACCG +CTCACACGTGCTTCTC +CTCAGAATCGGATGGA +CTCATTATCTAGAGTC +CTCCTAGTCACGCATA +CTCGGAGAGCTGAAAT +CTCGGAGTCTTAGAGC +CTCGGGACACACGCTG +CTCGGGATCGTAGGAG +CTCGTACAGGTAAACT +CTCTAATGTCCAGTTA +CTCTGGTAGAGTGACC +CTGAAGTCAATTGCTG +CTGAAGTGTATAATGG +CTGAAGTGTGTCGCTG +CTGATCCAGTAGCGGT +CTGATCCTCGTCACGG +CTGCCTAGTTCGTGAT +CTGCGGAAGACTAGAT +CTGCTGTCAAGGTTCT +CTGCTGTCATTATCTC +CTGCTGTTCAACTCTT +CTGGTCTTCATAAAGG +CTGTGCTAGCAGGTCA +CTGTGCTCATATACGC +CTGTTTAAGGGATGGG +CTTACCGGTGGACGAT +CTTAGGACAAACCTAC +CTTCTCTAGATGGCGT +CTTGGCTAGTCAAGGC +CTTTGCGAGATCCTGT +CTTTGCGGTTTAAGCC +CTTTGCGGTTTGACAC +GAAATGATCTCCTATA +GAATAAGGTCAAAGAT +GAATGAATCATCACCC +GACCAATCAGCTGGCT +GACCAATGTCATGCAT +GACGCGTTCCGATATG +GACGGCTCATGATCCA +GACGTGCCATACGCTA +GACTGCGCAATGGACG +GACTGCGCATCTACGA +GACTGCGGTCGGCACT +GATCGCGTCGTAGGTT +GATCTAGGTCTAGCGC +GATGAAATCACAACGT +GATGCTAGTATATGGA +GATTCAGCATGCGCAC +GCAAACTAGAGGGCTT +GCAAACTGTGTCAATC +GCAAACTTCTGCGTAA +GCACTCTAGCACAGGT +GCAGCCACAGGACCCT +GCAGCCATCCTCAATT +GCATGATGTCAACATC +GCATGTACACAGCGTC +GCATGTAGTTCAACCA +GCATGTAGTTGCCTCT +GCGACCACAGACAAAT +GCGAGAACAGATGGGT +GCGCAACCACCTGGTG +GCGCAACTCGTCACGG +GCGCAGTAGGAGTACC +GCGCAGTGTTCGCTAA +GCGCGATAGGATGGAA +GCGCGATGTAGCTTGT +GCGGGTTCATCCGTGG +GCGGGTTTCGTTTATC +GCTCTGTGTGCCTGGT +GCTGCAGTCTGAGTGT +GCTTCCAAGCAGGCTA +GCTTCCAGTGCAGTAG +GCTTGAAAGAAGGACA +GGAATAACACCAGGTC +GGACAAGAGTACGCCC +GGACATTCACTGCCAG +GGACATTTCACAGTAC +GGACGTCAGTGGGATC +GGATGTTTCCACTGGG +GGCAATTCACCATCCT +GGCGACTTCAACACCA +GGCTGGTTCTCGTTTA +GGGAATGAGGGTTTCT +GGGACCTCAGTCGATT +GGGACCTTCGGAGGTA +GGGATGAGTGCAGACA +GGTGCGTTCAGCTCGG +GGTGCGTTCGCTAGCG +GTACGTAGTATCAGTC +GTACTCCCACAGACAG +GTAGGCCCACTGCCAG +GTATCTTAGACGCTTT +GTATCTTTCCTCAACC +GTATTCTAGGTTCCTA +GTCACAATCTCAACTT +GTCACGGAGCACACAG +GTCATTTGTGCTTCTC +GTGCAGCTCTTCATGT +GTGCATAAGGAGCGTT +GTGCGGTAGCTACCGC +GTGCGGTAGGCCGAAT +GTGCGGTCATGCCACG +GTGCTTCAGATGAGAG +GTGGGTCCATCGGGTC +GTGGGTCGTTCGAATC +GTTAAGCAGCCACCTG +GTTAAGCAGTACATGA +GTTAAGCCAATTGCTG +GTTACAGGTCAGGACA +GTTACAGTCCAGTAGT +GTTCTCGTCTAACTGG +TAAACCGCAAGGACAC +TAAACCGCATACGCCG +TAAACCGCATGGTAGG +TAAGCGTAGCTCCTCT +TACACGATCGTGGGAA +TACAGTGAGTGTCCCG +TACAGTGCAGCTCGCA +TACGGATCAGCTATTG +TACGGGCCACAACGTT +TACGGTAAGGATGCGT +TACTTACAGGCTATCT +TACTTGTAGACTTTCG +TACTTGTCACATAACC +TAGCCGGCAGGGTTAG +TATGCCCCAATGTAAG +TATGCCCGTACTTAGC +TCAACGAAGCTAGTGG +TCAATCTAGGATGCGT +TCACAAGCATCCTTGC +TCACGAATCACTCCTG +TCAGATGTCGTTGCCT +TCAGCAATCAGCACAT +TCAGGATGTATAGGGC +TCGCGAGGTTCCAACA +TCGCGAGGTTGTCTTT +TCGTACCAGGCTCAGA +TCGTAGAGTCTTGTCC +TCTATTGCATGCCTAA +TCTCTAACAGATCCAT +TCTTTCCTCCACTCCA +TGACAACGTTGTGGCC +TGACTAGGTTCGGGCT +TGACTAGTCACATACG +TGACTTTCATTGGCGC +TGAGAGGCATGTCGAT +TGAGCCGAGCGAAGGG +TGAGCCGCAGTCACTA +TGAGGGAAGAGACTTA +TGAGGGACATCCAACA +TGCACCTCATGCAATC +TGCCAAACAAACCTAC +TGCCAAATCGAATCCA +TGCCCTAAGTGTACTC +TGCGCAGAGGAGTTTA +TGCGCAGGTGGGTATG +TGCGTGGGTCTCCACT +TGCTACCCATGACGGA +TGCTACCTCGGCTACG +TGCTGCTGTTATTCTC +TGCTGCTGTTCGGCAC +TGCTGCTTCAAAGTAG +TGGACGCAGACCACGA +TGGACGCCAGAGTGTG +TGGCGCACAGATGGGT +TGGCTGGCACCCATTC +TGGGAAGCATCCCATC +TGGTTAGTCAACACAC +TGGTTAGTCACAATGC +TGGTTCCAGTATTGGA +TGGTTCCCAAGCCGCT +TGGTTCCCATCGTCGG +TGTATTCGTAGCGTGA +TGTCCCATCAACACTG +TGTGGTAAGGGCATGT +TTAACTCCAACACCTA +TTAGGACCAGCCTTTC +TTAGGACGTCTTTCAT +TTAGTTCCAAGTAGTA +TTATGCTCACCAACCG +TTATGCTTCCACGTTC +TTATGCTTCCCTTGTG +TTCCCAGTCTTGCATT +TTCGGTCAGCTAAACA +TTCTCAAAGCTACCTA +TTCTCAATCCACGTTC +TTCTCAATCGCCTGAG +TTCTCCTTCGCCAAAT +TTCTTAGTCAGCTCGG +TTGAACGAGCTTCGCG +TTGAACGCACGAAAGC +TTGCGTCGTTATTCTC +TTGTAGGTCGGATGTT +TTTACTGAGGCTAGGT +TTTACTGCAGTGGAGT +TTTCCTCCACTTGGAT +TTTCCTCCATCTCGCT +TTTGGTTAGCACCGTC +TTTGGTTAGTGGGCTA
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/filtered3.Homo_sapiens.GRCh38.100.chr21.gtf Wed Aug 05 09:41:22 2020 -0400 @@ -0,0 +1,461 @@ +#!genome-build GRCh38.p13 +#!genome-version GRCh38 +#!genome-date 2013-12 +#!genome-build-accession NCBI:GCA_000001405.28 +#!genebuild-last-updated 2019-06 +21 havana gene 1000 6346 . + . gene_id "ENSG00000279493"; gene_version "1"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; +21 havana transcript 1000 6346 . + . gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5"; +21 havana exon 1000 1075 . + . gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; exon_number "1"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003760288"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5"; +21 havana CDS 1000 1075 . + 0 gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; exon_number "1"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485664"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5"; +21 havana exon 1749 1888 . + . gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; exon_number "2"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003758404"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5"; +21 havana CDS 1749 1888 . + 2 gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; exon_number "2"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485664"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5"; +21 havana exon 3587 3672 . + . gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; exon_number "3"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003755466"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5"; +21 havana CDS 3587 3672 . + 0 gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; exon_number "3"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485664"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5"; +21 havana exon 6136 6346 . + . gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; exon_number "4"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003755385"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5"; +21 havana CDS 6136 6298 . + 1 gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; exon_number "4"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485664"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5"; +21 havana stop_codon 6299 6301 . + 0 gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; exon_number "4"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5"; +21 havana three_prime_utr 6302 6346 . + . gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5"; +21 ensembl_havana gene 11694 29867 . + . gene_id "ENSG00000277117"; gene_version "5"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; +21 ensembl_havana transcript 11694 29862 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana exon 11694 11894 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003716400"; exon_version "1"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana CDS 11881 11894 . + 0 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000483732"; protein_version "1"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana start_codon 11881 11883 . + 0 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana exon 14210 14250 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "2"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003742034"; exon_version "1"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana CDS 14210 14250 . + 1 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "2"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000483732"; protein_version "1"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana exon 15481 15831 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003714757"; exon_version "1"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana CDS 15481 15831 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000483732"; protein_version "1"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana exon 17136 17426 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003728725"; exon_version "1"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana CDS 17136 17426 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000483732"; protein_version "1"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana exon 21254 21418 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "5"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; 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+21 ensembl_havana CDS 22609 22644 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "6"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000483732"; protein_version "1"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana exon 29786 29862 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; exon_number "7"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003756380"; exon_version "1"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana CDS 29786 29814 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; 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transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana three_prime_utr 29818 29862 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000612610"; transcript_version "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "1"; +21 ensembl transcript 11694 29867 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "5"; +21 ensembl exon 11694 11894 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; 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gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; exon_id "ENSE00003746700"; exon_version "1"; tag "basic"; transcript_support_level "5"; +21 ensembl CDS 21254 21418 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; exon_number "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; protein_id "ENSP00000484302"; protein_version "1"; tag "basic"; transcript_support_level "5"; +21 ensembl exon 22609 22644 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; exon_number "5"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; exon_id "ENSE00003753253"; 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transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "5"; +21 ensembl three_prime_utr 29818 29867 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "5"; +21 havana transcript 11732 25972 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana exon 11732 11894 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; 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exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana exon 14210 14250 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "2"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; exon_id "ENSE00003742034"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana CDS 14210 14250 . + 1 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "2"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; protein_id "ENSP00000485129"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana exon 15481 15831 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; exon_id "ENSE00003714757"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana CDS 15481 15831 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; protein_id "ENSP00000485129"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana exon 17136 17426 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; exon_id "ENSE00003728725"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana CDS 17136 17426 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; protein_id "ENSP00000485129"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana exon 21254 21418 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "5"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; exon_id "ENSE00003746700"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana CDS 21254 21418 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "5"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; protein_id "ENSP00000485129"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana exon 22609 22644 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "6"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; exon_id "ENSE00003753253"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana CDS 22609 22644 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "6"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; protein_id "ENSP00000485129"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana exon 23783 25972 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "7"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; exon_id "ENSE00003759057"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana CDS 23783 23790 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "7"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; protein_id "ENSP00000485129"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana stop_codon 23791 23793 . + 0 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "7"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana five_prime_utr 11732 11880 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana three_prime_utr 23794 25972 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana transcript 11732 23885 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "2"; +21 havana exon 11732 11894 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003755585"; exon_version "1"; transcript_support_level "2"; +21 havana CDS 11881 11894 . + 0 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; protein_id "ENSP00000485557"; protein_version "1"; transcript_support_level "2"; +21 havana start_codon 11881 11883 . + 0 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "2"; +21 havana exon 14210 14250 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "2"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003742034"; exon_version "1"; transcript_support_level "2"; +21 havana CDS 14210 14250 . + 1 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "2"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; protein_id "ENSP00000485557"; protein_version "1"; transcript_support_level "2"; +21 havana exon 15633 15831 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003757607"; exon_version "1"; transcript_support_level "2"; +21 havana CDS 15633 15808 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; protein_id "ENSP00000485557"; protein_version "1"; transcript_support_level "2"; +21 havana stop_codon 15809 15811 . + 0 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "2"; +21 havana exon 17136 17426 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003760332"; exon_version "1"; transcript_support_level "2"; +21 havana exon 21254 21418 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "5"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003759504"; exon_version "1"; transcript_support_level "2"; +21 havana exon 22609 22644 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "6"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003757428"; exon_version "1"; transcript_support_level "2"; +21 havana exon 23783 23885 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "7"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003755111"; exon_version "1"; transcript_support_level "2"; +21 havana five_prime_utr 11732 11880 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "2"; +21 havana three_prime_utr 15812 15831 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "2"; +21 havana three_prime_utr 17136 17426 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "2"; +21 havana three_prime_utr 21254 21418 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "2"; +21 havana three_prime_utr 22609 22644 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "2"; +21 havana three_prime_utr 23783 23885 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "2"; +21 havana transcript 11734 25326 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "2"; +21 havana exon 11734 11894 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003759226"; exon_version "1"; tag "basic"; transcript_support_level "2"; +21 havana CDS 11881 11894 . + 0 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485649"; protein_version "1"; tag "basic"; transcript_support_level "2"; +21 havana start_codon 11881 11883 . + 0 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "2"; +21 havana exon 14210 14250 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "2"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003742034"; exon_version "1"; tag "basic"; transcript_support_level "2"; +21 havana CDS 14210 14250 . + 1 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "2"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485649"; protein_version "1"; tag "basic"; transcript_support_level "2"; +21 havana exon 17136 17426 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003728725"; exon_version "1"; tag "basic"; transcript_support_level "2"; +21 havana CDS 17136 17426 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485649"; protein_version "1"; tag "basic"; transcript_support_level "2"; +21 havana exon 21254 21418 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003746700"; exon_version "1"; tag "basic"; transcript_support_level "2"; +21 havana CDS 21254 21418 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485649"; protein_version "1"; tag "basic"; transcript_support_level "2"; +21 havana exon 22609 22644 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "5"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003753253"; exon_version "1"; tag "basic"; transcript_support_level "2"; +21 havana CDS 22609 22644 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "5"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485649"; protein_version "1"; tag "basic"; transcript_support_level "2"; +21 havana exon 23783 25326 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "6"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003760325"; exon_version "1"; tag "basic"; transcript_support_level "2"; +21 havana CDS 23783 23790 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "6"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485649"; protein_version "1"; tag "basic"; transcript_support_level "2"; +21 havana stop_codon 23791 23793 . + 0 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "6"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "2"; +21 havana five_prime_utr 11734 11880 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "2"; +21 havana three_prime_utr 23794 25326 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "2"; +21 havana gene 62659 77068 . + . gene_id "ENSG00000279687"; gene_version "1"; gene_name "FP565260.5"; gene_source "havana"; gene_biotype "lncRNA"; +21 havana transcript 62659 77068 . + . gene_id "ENSG00000279687"; gene_version "1"; transcript_id "ENST00000623188"; transcript_version "1"; gene_name "FP565260.5"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "FP565260.5-201"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "basic"; transcript_support_level "3"; +21 havana exon 62659 62886 . + . gene_id "ENSG00000279687"; gene_version "1"; transcript_id "ENST00000623188"; transcript_version "1"; exon_number "1"; gene_name "FP565260.5"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "FP565260.5-201"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759048"; exon_version "1"; tag "basic"; transcript_support_level "3"; +21 havana exon 76818 77068 . + . gene_id "ENSG00000279687"; gene_version "1"; transcript_id "ENST00000623188"; transcript_version "1"; exon_number "2"; gene_name "FP565260.5"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "FP565260.5-201"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759260"; exon_version "1"; tag "basic"; transcript_support_level "3"; +21 ensembl_havana gene 68495 117614 . - . gene_id "ENSG00000280071"; gene_version "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; +21 havana transcript 68495 117128 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana exon 117099 117128 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003760139"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana CDS 117099 117128 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485439"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana exon 115080 115193 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003759878"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana CDS 115080 115193 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485439"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana exon 113957 114076 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003754178"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana CDS 113957 114076 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485439"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana exon 110912 111004 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003724593"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana CDS 110912 111004 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485439"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana exon 68885 68935 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003759383"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana CDS 68885 68935 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485439"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana exon 68495 68497 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003760307"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana CDS 68495 68497 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485439"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana transcript 68495 117128 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana exon 117099 117128 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003760139"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana CDS 117099 117128 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485058"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana exon 115080 115193 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003759878"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana CDS 115080 115193 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485058"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana exon 113957 114076 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003754178"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana CDS 113957 114076 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485058"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana exon 68885 68935 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003759383"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana CDS 68885 68935 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485058"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana exon 68495 68497 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003760307"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana CDS 68495 68497 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485058"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana transcript 105542 116344 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; tag "basic"; transcript_support_level "3"; +21 havana exon 116285 116344 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; exon_id "ENSE00003756626"; exon_version "1"; tag "basic"; transcript_support_level "3"; +21 havana exon 115080 115193 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; exon_id "ENSE00003756707"; exon_version "1"; tag "basic"; transcript_support_level "3"; +21 havana CDS 115080 115129 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; protein_id "ENSP00000483086"; protein_version "2"; tag "basic"; transcript_support_level "3"; +21 havana start_codon 115127 115129 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; tag "basic"; transcript_support_level "3"; +21 havana exon 113957 114076 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; exon_id "ENSE00003754178"; exon_version "1"; tag "basic"; transcript_support_level "3"; +21 havana CDS 113957 114076 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; protein_id "ENSP00000483086"; protein_version "2"; tag "basic"; transcript_support_level "3"; +21 havana exon 110912 111004 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; exon_id "ENSE00003724593"; exon_version "1"; tag "basic"; transcript_support_level "3"; +21 havana CDS 110912 111004 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; protein_id "ENSP00000483086"; protein_version "2"; tag "basic"; transcript_support_level "3"; +21 havana exon 107892 108048 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; exon_id "ENSE00003722853"; exon_version "1"; tag "basic"; transcript_support_level "3"; +21 havana CDS 107892 108048 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; protein_id "ENSP00000483086"; protein_version "2"; tag "basic"; transcript_support_level "3"; +21 havana exon 105542 106432 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; exon_id "ENSE00003747879"; exon_version "2"; tag "basic"; transcript_support_level "3"; +21 havana CDS 106307 106432 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; protein_id "ENSP00000483086"; protein_version "2"; tag "basic"; transcript_support_level "3"; +21 havana stop_codon 106304 106306 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; tag "basic"; transcript_support_level "3"; +21 havana five_prime_utr 116285 116344 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; tag "basic"; transcript_support_level "3"; +21 havana five_prime_utr 115130 115193 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; tag "basic"; transcript_support_level "3"; +21 havana three_prime_utr 105542 106303 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; tag "basic"; transcript_support_level "3"; +21 ensembl_havana transcript 105542 117570 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)"; +21 ensembl_havana exon 117415 117570 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; exon_id "ENSE00003752103"; exon_version "3"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)"; +21 ensembl_havana CDS 117415 117555 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; protein_id "ENSP00000480313"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)"; +21 ensembl_havana start_codon 117553 117555 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)"; +21 ensembl_havana exon 117099 117151 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; exon_id "ENSE00003727348"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)"; +21 ensembl_havana CDS 117099 117151 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; protein_id "ENSP00000480313"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)"; +21 ensembl_havana exon 115080 115193 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; exon_id "ENSE00003759878"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)"; +21 ensembl_havana CDS 115080 115193 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; protein_id "ENSP00000480313"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)"; +21 ensembl_havana exon 113957 114076 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; exon_id "ENSE00003754178"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)"; +21 ensembl_havana CDS 113957 114076 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; protein_id "ENSP00000480313"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)"; +21 ensembl_havana exon 110912 111004 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; exon_id "ENSE00003724593"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)"; +21 ensembl_havana CDS 110912 111004 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; protein_id "ENSP00000480313"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)"; +21 ensembl_havana exon 107892 108048 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; exon_id "ENSE00003722853"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)"; +21 ensembl_havana CDS 107892 108048 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; protein_id "ENSP00000480313"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)"; +21 ensembl_havana exon 105542 106432 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "7"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; exon_id "ENSE00003747879"; exon_version "2"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)"; +21 ensembl_havana CDS 106307 106432 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "7"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; protein_id "ENSP00000480313"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)"; +21 ensembl_havana stop_codon 106304 106306 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "7"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)"; +21 ensembl_havana five_prime_utr 117556 117570 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)"; +21 ensembl_havana three_prime_utr 105542 106303 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)"; +21 ensembl_havana transcript 106138 117573 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana exon 117415 117573 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; exon_id "ENSE00003759666"; exon_version "1"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana CDS 117415 117555 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; protein_id "ENSP00000485300"; protein_version "1"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana start_codon 117553 117555 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana exon 117099 117151 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; exon_id "ENSE00003727348"; exon_version "1"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana CDS 117099 117151 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; protein_id "ENSP00000485300"; protein_version "1"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana exon 115080 115193 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; exon_id "ENSE00003759878"; exon_version "1"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana CDS 115080 115193 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; protein_id "ENSP00000485300"; protein_version "1"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana exon 113957 114076 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; exon_id "ENSE00003754178"; exon_version "1"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana CDS 113957 114076 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; protein_id "ENSP00000485300"; protein_version "1"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana exon 107892 108048 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; exon_id "ENSE00003722853"; exon_version "1"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana CDS 107892 108048 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; protein_id "ENSP00000485300"; protein_version "1"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana exon 106138 106432 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; exon_id "ENSE00003758207"; exon_version "1"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana CDS 106307 106432 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; protein_id "ENSP00000485300"; protein_version "1"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana stop_codon 106304 106306 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana five_prime_utr 117556 117573 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana three_prime_utr 106138 106303 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624120"; transcript_version "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-206"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86975"; tag "basic"; transcript_support_level "1"; +21 havana transcript 109835 114069 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624748"; transcript_version "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-209"; transcript_source "havana"; transcript_biotype "processed_transcript"; transcript_support_level "3"; +21 havana exon 113957 114069 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624748"; transcript_version "2"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-209"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003756645"; exon_version "1"; transcript_support_level "3"; +21 havana exon 110912 111004 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624748"; transcript_version "2"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-209"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003755477"; exon_version "1"; transcript_support_level "3"; +21 havana exon 109835 110312 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624748"; transcript_version "2"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-209"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003755419"; exon_version "1"; transcript_support_level "3"; +21 havana transcript 109835 117474 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana exon 117415 117474 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003758926"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana CDS 117415 117474 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485335"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana exon 117099 117151 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003727348"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana CDS 117099 117151 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485335"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana exon 115080 115193 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003759878"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana CDS 115080 115193 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485335"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana exon 113957 114076 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003754178"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana CDS 113957 114076 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485335"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana exon 110912 111004 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003724593"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana CDS 110912 111004 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485335"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana exon 109835 110090 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003755057"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana CDS 109859 110090 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485335"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana stop_codon 109856 109858 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana three_prime_utr 109835 109855 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana transcript 109837 117614 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "5"; +21 havana exon 117415 117614 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003758517"; exon_version "1"; transcript_support_level "5"; +21 havana CDS 117415 117555 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; protein_id "ENSP00000485404"; protein_version "2"; transcript_support_level "5"; +21 havana start_codon 117553 117555 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "5"; +21 havana exon 115080 115193 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003781030"; exon_version "1"; transcript_support_level "5"; +21 havana CDS 115164 115193 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; protein_id "ENSP00000485404"; protein_version "2"; transcript_support_level "5"; +21 havana stop_codon 115161 115163 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "5"; +21 havana exon 113957 114076 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003757584"; exon_version "1"; transcript_support_level "5"; +21 havana exon 110912 111004 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003755477"; exon_version "1"; transcript_support_level "5"; +21 havana exon 109837 110090 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003760243"; exon_version "1"; transcript_support_level "5"; +21 havana five_prime_utr 117556 117614 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "5"; +21 havana three_prime_utr 115080 115160 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "5"; +21 havana three_prime_utr 113957 114076 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "5"; +21 havana three_prime_utr 110912 111004 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "5"; +21 havana three_prime_utr 109837 110090 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "5"; +21 havana transcript 110650 117579 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624714"; transcript_version "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-208"; transcript_source "havana"; transcript_biotype "retained_intron"; transcript_support_level "2"; +21 havana exon 117415 117579 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624714"; transcript_version "3"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-208"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003756995"; exon_version "1"; transcript_support_level "2"; +21 havana exon 117099 117151 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624714"; transcript_version "3"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-208"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003758703"; exon_version "1"; transcript_support_level "2"; +21 havana exon 115080 115193 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624714"; transcript_version "3"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-208"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003758611"; exon_version "1"; transcript_support_level "2"; +21 havana exon 113957 114076 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624714"; transcript_version "3"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-208"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003757584"; exon_version "1"; transcript_support_level "2"; +21 havana exon 110650 111004 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624714"; transcript_version "3"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-208"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003759960"; exon_version "1"; transcript_support_level "2"; +21 havana transcript 111214 117128 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623390"; transcript_version "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-204"; transcript_source "havana"; transcript_biotype "processed_transcript"; transcript_support_level "3"; +21 havana exon 117099 117128 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623390"; transcript_version "1"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-204"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003754910"; exon_version "1"; transcript_support_level "3"; +21 havana exon 115080 115193 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623390"; transcript_version "1"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-204"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003758611"; exon_version "1"; transcript_support_level "3"; +21 havana exon 113957 114076 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623390"; transcript_version "1"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-204"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003757584"; exon_version "1"; transcript_support_level "3"; +21 havana exon 111214 111401 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623390"; transcript_version "1"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-204"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003756808"; exon_version "1"; transcript_support_level "3"; +21 havana transcript 113687 114379 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000622915"; transcript_version "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-203"; transcript_source "havana"; transcript_biotype "processed_transcript"; transcript_support_level "3"; +21 havana exon 114226 114379 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000622915"; transcript_version "1"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-203"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003759301"; exon_version "1"; transcript_support_level "3"; +21 havana exon 113687 114076 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000622915"; transcript_version "1"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-203"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003758934"; exon_version "1"; transcript_support_level "3"; +21 havana gene 105544 123006 . - . gene_id "ENSG00000276612"; gene_version "3"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; +21 havana transcript 105544 123006 . - . gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3"; +21 havana exon 122856 123006 . - . gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "1"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003777763"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3"; +21 havana CDS 122856 123006 . - 2 gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "1"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485630"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3"; +21 havana exon 122627 122701 . - . gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "2"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003755072"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3"; +21 havana CDS 122627 122701 . - 1 gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "2"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485630"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3"; +21 havana exon 115080 115193 . - . gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "3"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003759460"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3"; +21 havana CDS 115080 115193 . - 1 gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "3"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485630"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3"; +21 havana exon 113957 114076 . - . gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "4"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003757983"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3"; +21 havana CDS 113957 114076 . - 1 gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "4"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485630"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3"; +21 havana exon 110912 111004 . - . gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "5"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003760127"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3"; +21 havana CDS 110912 111004 . - 1 gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "5"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485630"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3"; +21 havana exon 107892 108048 . - . gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "6"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003759299"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3"; +21 havana CDS 107892 108048 . - 1 gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "6"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485630"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3"; +21 havana exon 105544 106432 . - . gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "7"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003757086"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3"; +21 havana CDS 106307 106432 . - 0 gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "7"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485630"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3"; +21 havana stop_codon 106304 106306 . - 0 gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "7"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3"; +21 havana three_prime_utr 105544 106303 . - . gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3"; +21 ensembl_havana gene 120072 143859 . - . gene_id "ENSG00000275464"; gene_version "5"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; +21 ensembl_havana transcript 120072 143859 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 ensembl_havana exon 143824 143859 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003726066"; exon_version "3"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 ensembl_havana CDS 143824 143841 . - 0 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 ensembl_havana start_codon 143839 143841 . - 0 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 ensembl_havana exon 142162 142274 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003746673"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 ensembl_havana CDS 142162 142274 . - 0 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 ensembl_havana exon 137411 137505 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "3"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003741495"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; 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gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "4"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 ensembl_havana exon 136490 136633 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "5"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003723956"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 ensembl_havana CDS 136490 136633 . - 1 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "5"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 ensembl_havana exon 135859 135994 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "6"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003716502"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 ensembl_havana CDS 135859 135994 . - 1 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "6"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 ensembl_havana exon 135338 135567 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "7"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003720550"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 ensembl_havana CDS 135338 135567 . - 0 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "7"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 ensembl_havana exon 133292 133435 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "8"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003719765"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 ensembl_havana CDS 133292 133435 . - 1 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "8"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 ensembl_havana exon 132423 132493 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "9"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003736452"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 ensembl_havana CDS 132423 132493 . - 1 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "9"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 ensembl_havana exon 131733 131869 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "10"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003722093"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 ensembl_havana CDS 131733 131869 . - 2 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "10"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; 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gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "12"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003754065"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 ensembl_havana CDS 130478 130625 . - 1 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "12"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 ensembl_havana exon 130154 130304 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "13"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003752208"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 ensembl_havana CDS 130154 130304 . - 0 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "13"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 ensembl_havana exon 128899 129079 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "14"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003746456"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 ensembl_havana CDS 128899 129079 . - 2 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "14"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 ensembl_havana exon 126528 126675 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "15"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003731399"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 ensembl_havana CDS 126528 126675 . - 1 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "15"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000482107"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 ensembl_havana exon 125136 125244 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000617716"; transcript_version "4"; exon_number "16"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-201"; 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transcript_support_level "5"; +21 havana exon 125136 125244 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; exon_number "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003725608"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana CDS 125136 125244 . - 0 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; exon_number "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; protein_id "ENSP00000488213"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana exon 124290 124355 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003727820"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana CDS 124290 124355 . - 2 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; protein_id "ENSP00000488213"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana exon 123562 123680 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; exon_number "3"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003780753"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana CDS 123619 123680 . - 2 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; exon_number "3"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; protein_id "ENSP00000488213"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana stop_codon 123616 123618 . - 0 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; exon_number "3"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana exon 123103 123321 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; exon_number "4"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003782531"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana exon 122856 123006 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; exon_number "5"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003759716"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana exon 122654 122701 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; exon_number "6"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003775733"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana three_prime_utr 123562 123615 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana three_prime_utr 123103 123321 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana three_prime_utr 122856 123006 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana three_prime_utr 122654 122701 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000632537"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-202"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana transcript 123400 132097 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000623011"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-203"; transcript_source "havana"; transcript_biotype "retained_intron"; transcript_support_level "2"; +21 havana exon 131733 132097 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000623011"; transcript_version "1"; exon_number "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-203"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003756554"; exon_version "1"; transcript_support_level "2"; +21 havana exon 130760 130908 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000623011"; transcript_version "1"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-203"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003755024"; exon_version "1"; transcript_support_level "2"; +21 havana exon 130478 130625 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000623011"; transcript_version "1"; exon_number "3"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-203"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003757184"; exon_version "1"; transcript_support_level "2"; +21 havana exon 128899 130304 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000623011"; transcript_version "1"; exon_number "4"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-203"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003759985"; exon_version "1"; transcript_support_level "2"; +21 havana exon 125136 126675 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000623011"; transcript_version "1"; exon_number "5"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-203"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003759675"; exon_version "1"; transcript_support_level "2"; +21 havana exon 123400 124355 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000623011"; transcript_version "1"; exon_number "6"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-203"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003756393"; exon_version "1"; transcript_support_level "2"; +21 havana transcript 126189 127140 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000624312"; transcript_version "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-204"; transcript_source "havana"; transcript_biotype "retained_intron"; transcript_support_level "4"; +21 havana exon 127079 127140 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000624312"; transcript_version "2"; exon_number "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-204"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003758237"; exon_version "1"; transcript_support_level "4"; +21 havana exon 126189 126675 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000624312"; transcript_version "2"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-204"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003756875"; exon_version "1"; transcript_support_level "4"; +21 havana transcript 132423 133925 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000633442"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-205"; transcript_source "havana"; transcript_biotype "processed_transcript"; transcript_support_level "4"; +21 havana exon 133625 133925 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000633442"; transcript_version "1"; exon_number "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-205"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003776830"; exon_version "1"; transcript_support_level "4"; +21 havana exon 133292 133435 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000633442"; transcript_version "1"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-205"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003778186"; exon_version "1"; transcript_support_level "4"; +21 havana exon 132423 132493 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000633442"; transcript_version "1"; exon_number "3"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-205"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003776945"; exon_version "1"; transcript_support_level "4"; +21 havana transcript 132423 134646 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000633593"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-206"; transcript_source "havana"; transcript_biotype "processed_transcript"; transcript_support_level "3"; +21 havana exon 134439 134646 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000633593"; transcript_version "1"; exon_number "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-206"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003777768"; exon_version "1"; transcript_support_level "3"; +21 havana exon 133292 133435 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000633593"; transcript_version "1"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-206"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003778186"; exon_version "1"; transcript_support_level "3"; +21 havana exon 132423 132493 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000633593"; transcript_version "1"; exon_number "3"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-206"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003776945"; exon_version "1"; transcript_support_level "3"; +21 havana transcript 136550 143728 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634020"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-207"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; +21 havana exon 143562 143728 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634020"; transcript_version "1"; exon_number "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003777868"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; +21 havana exon 142162 142274 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634020"; transcript_version "1"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003782733"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; +21 havana CDS 142162 142219 . - 0 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634020"; transcript_version "1"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-207"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000499772"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; +21 havana start_codon 142217 142219 . - 0 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634020"; transcript_version "1"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-207"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; +21 havana exon 137411 137505 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634020"; transcript_version "1"; exon_number "3"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003779772"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; +21 havana CDS 137411 137505 . - 2 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634020"; transcript_version "1"; exon_number "3"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-207"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000499772"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; +21 havana exon 136980 137079 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634020"; transcript_version "1"; exon_number "4"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003782084"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; +21 havana CDS 136980 137079 . - 0 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634020"; transcript_version "1"; exon_number "4"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-207"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000499772"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; +21 havana exon 136550 136633 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634020"; transcript_version "1"; exon_number "5"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003781998"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; +21 havana CDS 136550 136633 . - 2 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634020"; transcript_version "1"; exon_number "5"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-207"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000499772"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; +21 havana five_prime_utr 143562 143728 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634020"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-207"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; +21 havana five_prime_utr 142220 142274 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634020"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-207"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; +21 havana transcript 136591 143448 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana exon 143261 143448 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003783072"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana exon 142162 142274 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003782733"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana CDS 142162 142219 . - 0 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000499619"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana start_codon 142217 142219 . - 0 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana exon 137411 137505 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "3"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003779772"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana CDS 137411 137505 . - 2 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "3"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000499619"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana exon 136980 137079 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "4"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003782084"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana CDS 136980 137079 . - 0 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "4"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000499619"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana exon 136591 136633 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "5"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003776674"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana CDS 136591 136633 . - 2 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "5"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000499619"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana five_prime_utr 143261 143448 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana five_prime_utr 142220 142274 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana gene 144700 154673 . - . gene_id "ENSG00000280433"; gene_version "1"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; +21 havana transcript 144700 152896 . - . gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623998"; transcript_version "1"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "2"; +21 havana exon 152719 152896 . - . gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623998"; transcript_version "1"; exon_number "1"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003756000"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "2"; +21 havana CDS 152719 152896 . - 0 gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623998"; transcript_version "1"; exon_number "1"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485615"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "2"; +21 havana exon 148281 148475 . - . gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623998"; transcript_version "1"; exon_number "2"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003757796"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "2"; +21 havana CDS 148281 148475 . - 2 gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623998"; transcript_version "1"; exon_number "2"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485615"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "2"; +21 havana exon 144700 147960 . - . gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623998"; transcript_version "1"; exon_number "3"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003755430"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "2"; +21 havana CDS 147725 147960 . - 2 gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623998"; transcript_version "1"; exon_number "3"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485615"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "2"; +21 havana stop_codon 147722 147724 . - 0 gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623998"; transcript_version "1"; exon_number "3"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "2"; +21 havana three_prime_utr 144700 147721 . - . gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623998"; transcript_version "1"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "2"; +21 havana transcript 146213 154673 . - . gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623744"; transcript_version "1"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-202"; transcript_source "havana"; transcript_biotype "retained_intron"; transcript_support_level "2"; +21 havana exon 152719 154673 . - . gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623744"; transcript_version "1"; exon_number "1"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-202"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003758857"; exon_version "1"; transcript_support_level "2"; +21 havana exon 148281 148475 . - . gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623744"; transcript_version "1"; exon_number "2"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-202"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003758141"; exon_version "1"; transcript_support_level "2"; +21 havana exon 146213 147960 . - . gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623744"; transcript_version "1"; exon_number "3"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-202"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003758852"; exon_version "1"; transcript_support_level "2"; +21 havana gene 221869 233034 . - . gene_id "ENSG00000279669"; gene_version "1"; gene_name "AC079801.1"; gene_source "havana"; gene_biotype "lncRNA"; +21 havana transcript 221869 233034 . - . gene_id "ENSG00000279669"; gene_version "1"; transcript_id "ENST00000623753"; transcript_version "1"; gene_name "AC079801.1"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "AC079801.1-201"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "basic"; transcript_support_level "3"; +21 havana exon 232904 233034 . - . gene_id "ENSG00000279669"; gene_version "1"; transcript_id "ENST00000623753"; transcript_version "1"; exon_number "1"; gene_name "AC079801.1"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "AC079801.1-201"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756545"; exon_version "1"; tag "basic"; transcript_support_level "3"; +21 havana exon 221869 222125 . - . gene_id "ENSG00000279669"; gene_version "1"; transcript_id "ENST00000623753"; transcript_version "1"; exon_number "2"; gene_name "AC079801.1"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "AC079801.1-201"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003758742"; exon_version "1"; tag "basic"; transcript_support_level "3"; +21 havana gene 488352 491743 . - . gene_id "ENSG00000279094"; gene_version "3"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; +21 havana transcript 488352 491743 . - . gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000624261"; transcript_version "1"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-202"; transcript_source "havana"; transcript_biotype "lncRNA"; transcript_support_level "1"; +21 havana exon 491570 491743 . - . gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000624261"; transcript_version "1"; exon_number "1"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-202"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003755185"; exon_version "1"; transcript_support_level "1"; +21 havana exon 489200 489302 . - . gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000624261"; transcript_version "1"; exon_number "2"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-202"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756104"; exon_version "1"; transcript_support_level "1"; +21 havana exon 488352 489010 . - . gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000624261"; transcript_version "1"; exon_number "3"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-202"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003755270"; exon_version "1"; transcript_support_level "1"; +21 havana transcript 488356 491698 . - . gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000624859"; transcript_version "3"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-203"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "basic"; transcript_support_level "3"; +21 havana exon 491570 491698 . - . gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000624859"; transcript_version "3"; exon_number "1"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-203"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759427"; exon_version "1"; tag "basic"; transcript_support_level "3"; +21 havana exon 489268 489302 . - . gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000624859"; transcript_version "3"; exon_number "2"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-203"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756891"; exon_version "1"; tag "basic"; transcript_support_level "3"; +21 havana exon 488356 489168 . - . gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000624859"; transcript_version "3"; exon_number "3"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-203"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003755916"; exon_version "1"; tag "basic"; transcript_support_level "3"; +21 havana transcript 488758 491698 . - . gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000623227"; transcript_version "1"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-201"; transcript_source "havana"; transcript_biotype "lncRNA"; transcript_support_level "2"; +21 havana exon 491570 491698 . - . gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000623227"; transcript_version "1"; exon_number "1"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-201"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759427"; exon_version "1"; transcript_support_level "2"; +21 havana exon 488758 489302 . - . gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000623227"; transcript_version "1"; exon_number "2"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-201"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756302"; exon_version "1"; transcript_support_level "2"; +21 ensembl_havana gene 542838 604081 . + . gene_id "ENSG00000274333"; gene_version "4"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; +21 ensembl_havana transcript 542838 579401 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000619252"; transcript_version "4"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-201"; transcript_source "ensembl_havana"; transcript_biotype "lncRNA"; tag "mRNA_end_NF"; transcript_support_level "2"; +21 ensembl_havana exon 542838 543039 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000619252"; transcript_version "4"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-201"; transcript_source "ensembl_havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003757879"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "2"; +21 ensembl_havana exon 575024 575188 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000619252"; transcript_version "4"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-201"; transcript_source "ensembl_havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003736165"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "2"; +21 ensembl_havana exon 579220 579401 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000619252"; transcript_version "4"; exon_number "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-201"; transcript_source "ensembl_havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003725700"; exon_version "2"; tag "mRNA_end_NF"; transcript_support_level "2"; +21 havana transcript 542860 579379 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623449"; transcript_version "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-202"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "basic"; transcript_support_level "5"; +21 havana exon 542860 543039 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623449"; transcript_version "3"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-202"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003758277"; exon_version "1"; tag "basic"; transcript_support_level "5"; +21 havana exon 575024 575188 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623449"; transcript_version "3"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-202"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003736165"; exon_version "1"; tag "basic"; transcript_support_level "5"; +21 havana exon 575646 575700 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623449"; transcript_version "3"; exon_number "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-202"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003758960"; exon_version "1"; tag "basic"; transcript_support_level "5"; +21 havana exon 579220 579379 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623449"; transcript_version "3"; exon_number "4"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-202"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003758361"; exon_version "1"; tag "basic"; transcript_support_level "5"; +21 havana transcript 542870 579884 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623436"; transcript_version "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-203"; transcript_source "havana"; transcript_biotype "lncRNA"; transcript_support_level "2"; +21 havana exon 542870 543039 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623436"; transcript_version "3"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-203"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759200"; exon_version "1"; transcript_support_level "2"; +21 havana exon 579220 579884 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623436"; transcript_version "3"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-203"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003758019"; exon_version "1"; transcript_support_level "2"; +21 havana transcript 542870 580429 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624627"; transcript_version "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-204"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "basic"; transcript_support_level "2"; +21 havana exon 542870 543039 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624627"; transcript_version "3"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-204"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759200"; exon_version "1"; tag "basic"; transcript_support_level "2"; +21 havana exon 555326 555384 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624627"; transcript_version "3"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-204"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003760163"; exon_version "1"; tag "basic"; transcript_support_level "2"; +21 havana exon 575024 575188 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624627"; transcript_version "3"; exon_number "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-204"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003736165"; exon_version "1"; tag "basic"; transcript_support_level "2"; +21 havana exon 579220 580429 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624627"; transcript_version "3"; exon_number "4"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-204"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003758631"; exon_version "1"; tag "basic"; transcript_support_level "2"; +21 havana transcript 542880 577847 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624368"; transcript_version "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-205"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "basic"; transcript_support_level "5"; +21 havana exon 542880 543039 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624368"; transcript_version "3"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-205"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003760225"; exon_version "1"; tag "basic"; transcript_support_level "5"; +21 havana exon 568871 569009 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624368"; transcript_version "3"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-205"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003757773"; exon_version "1"; tag "basic"; transcript_support_level "5"; +21 havana exon 574011 574176 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624368"; transcript_version "3"; exon_number "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-205"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756099"; exon_version "1"; tag "basic"; transcript_support_level "5"; +21 havana exon 575024 575188 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624368"; transcript_version "3"; exon_number "4"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-205"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003736165"; exon_version "1"; tag "basic"; transcript_support_level "5"; +21 havana exon 577338 577847 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624368"; transcript_version "3"; exon_number "5"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-205"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756549"; exon_version "1"; tag "basic"; transcript_support_level "5"; +21 havana transcript 542904 604081 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623914"; transcript_version "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-206"; transcript_source "havana"; transcript_biotype "lncRNA"; transcript_support_level "5"; +21 havana exon 542904 543039 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623914"; transcript_version "3"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-206"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759834"; exon_version "1"; transcript_support_level "5"; +21 havana exon 574011 574176 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623914"; transcript_version "3"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-206"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756099"; exon_version "1"; transcript_support_level "5"; +21 havana exon 575024 575188 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623914"; transcript_version "3"; exon_number "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-206"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003736165"; exon_version "1"; transcript_support_level "5"; +21 havana exon 603953 604081 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623914"; transcript_version "3"; exon_number "4"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-206"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756599"; exon_version "1"; transcript_support_level "5"; +21 havana transcript 542908 575570 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624516"; transcript_version "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-207"; transcript_source "havana"; transcript_biotype "lncRNA"; transcript_support_level "5"; +21 havana exon 542908 543039 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624516"; transcript_version "1"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-207"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759216"; exon_version "1"; transcript_support_level "5"; +21 havana exon 575024 575570 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624516"; transcript_version "1"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-207"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003760051"; exon_version "1"; transcript_support_level "5"; +21 havana transcript 542911 577987 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624412"; transcript_version "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-208"; transcript_source "havana"; transcript_biotype "lncRNA"; transcript_support_level "1"; +21 havana exon 542911 543039 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624412"; transcript_version "3"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-208"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003743849"; exon_version "1"; transcript_support_level "1"; +21 havana exon 575024 575188 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624412"; transcript_version "3"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-208"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003736165"; exon_version "1"; transcript_support_level "1"; +21 havana exon 577338 577987 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624412"; transcript_version "3"; exon_number "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-208"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759693"; exon_version "1"; transcript_support_level "1"; +21 havana transcript 542918 577385 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000622939"; transcript_version "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-209"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana exon 542918 543039 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000622939"; transcript_version "3"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-209"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003755533"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana exon 574011 574264 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000622939"; transcript_version "3"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-209"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756887"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana exon 575024 575188 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000622939"; transcript_version "3"; exon_number "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-209"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003736165"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana exon 577338 577385 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000622939"; transcript_version "3"; exon_number "4"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-209"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756347"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana transcript 555164 580435 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623050"; transcript_version "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-210"; transcript_source "havana"; transcript_biotype "lncRNA"; transcript_support_level "2"; +21 havana exon 555164 555384 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623050"; transcript_version "1"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-210"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003757026"; exon_version "1"; transcript_support_level "2"; +21 havana exon 575024 575188 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623050"; transcript_version "1"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-210"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003736165"; exon_version "1"; transcript_support_level "2"; +21 havana exon 579220 580435 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623050"; transcript_version "1"; exon_number "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-210"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759657"; exon_version "1"; transcript_support_level "2"; +21 havana transcript 571429 581205 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624444"; transcript_version "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-211"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "basic"; transcript_support_level "1"; +21 havana exon 571429 575188 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624444"; transcript_version "1"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-211"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003757240"; exon_version "1"; tag "basic"; transcript_support_level "1"; +21 havana exon 577338 581205 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624444"; transcript_version "1"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-211"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756530"; exon_version "1"; tag "basic"; transcript_support_level "1"; +21 havana transcript 572667 578729 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623887"; transcript_version "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-212"; transcript_source "havana"; transcript_biotype "lncRNA"; transcript_support_level "2"; +21 havana exon 572667 574458 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623887"; transcript_version "1"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-212"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003757844"; exon_version "1"; transcript_support_level "2"; +21 havana exon 578548 578729 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623887"; transcript_version "1"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-212"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756828"; exon_version "1"; transcript_support_level "2"; +21 ensembl transcript 574979 581204 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000611026"; transcript_version "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-213"; transcript_source "ensembl"; transcript_biotype "lncRNA"; transcript_support_level "2"; +21 ensembl exon 574979 575188 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000611026"; transcript_version "1"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-213"; transcript_source "ensembl"; transcript_biotype "lncRNA"; exon_id "ENSE00003717842"; exon_version "1"; transcript_support_level "2"; +21 ensembl exon 579220 581204 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000611026"; transcript_version "1"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-213"; transcript_source "ensembl"; transcript_biotype "lncRNA"; exon_id "ENSE00003740631"; exon_version "1"; transcript_support_level "2"; +21 ensembl gene 586591 586691 . + . gene_id "ENSG00000277777"; gene_version "1"; gene_name "CU633967.2"; gene_source "ensembl"; gene_biotype "misc_RNA"; +21 ensembl transcript 586591 586691 . + . gene_id "ENSG00000277777"; gene_version "1"; transcript_id "ENST00000610788"; transcript_version "1"; gene_name "CU633967.2"; gene_source "ensembl"; gene_biotype "misc_RNA"; transcript_name "CU633967.2-201"; transcript_source "ensembl"; transcript_biotype "misc_RNA"; tag "basic"; transcript_support_level "NA"; +21 ensembl exon 586591 586691 . + . gene_id "ENSG00000277777"; gene_version "1"; transcript_id "ENST00000610788"; transcript_version "1"; exon_number "1"; gene_name "CU633967.2"; gene_source "ensembl"; gene_biotype "misc_RNA"; transcript_name "CU633967.2-201"; transcript_source "ensembl"; transcript_biotype "misc_RNA"; exon_id "ENSE00003748388"; exon_version "1"; tag "basic"; transcript_support_level "NA"; +21 havana gene 692383 694838 . - . gene_id "ENSG00000279186"; gene_version "1"; gene_name "FP236315.2"; gene_source "havana"; gene_biotype "TEC"; +21 havana transcript 692383 694838 . - . gene_id "ENSG00000279186"; gene_version "1"; transcript_id "ENST00000624506"; transcript_version "1"; gene_name "FP236315.2"; gene_source "havana"; gene_biotype "TEC"; transcript_name "FP236315.2-201"; transcript_source "havana"; transcript_biotype "TEC"; tag "basic"; transcript_support_level "NA"; +21 havana exon 692383 694838 . - . gene_id "ENSG00000279186"; gene_version "1"; transcript_id "ENST00000624506"; transcript_version "1"; exon_number "1"; gene_name "FP236315.2"; gene_source "havana"; gene_biotype "TEC"; transcript_name "FP236315.2-201"; transcript_source "havana"; transcript_biotype "TEC"; exon_id "ENSE00003756739"; exon_version "1"; tag "basic"; transcript_support_level "NA"; +21 havana gene 694546 696361 . + . gene_id "ENSG00000279784"; gene_version "1"; gene_name "FP236315.3"; gene_source "havana"; gene_biotype "lncRNA"; +21 havana transcript 694546 696361 . + . gene_id "ENSG00000279784"; gene_version "1"; transcript_id "ENST00000623587"; transcript_version "1"; gene_name "FP236315.3"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "FP236315.3-201"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "basic"; transcript_support_level "2"; +21 havana exon 694546 694654 . + . gene_id "ENSG00000279784"; gene_version "1"; transcript_id "ENST00000623587"; transcript_version "1"; exon_number "1"; gene_name "FP236315.3"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "FP236315.3-201"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003758868"; exon_version "1"; tag "basic"; transcript_support_level "2"; +21 havana exon 696164 696361 . + . gene_id "ENSG00000279784"; gene_version "1"; transcript_id "ENST00000623587"; transcript_version "1"; exon_number "2"; gene_name "FP236315.3"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "FP236315.3-201"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003757033"; exon_version "1"; tag "basic"; transcript_support_level "2"; +21 havana gene 696205 698657 . - . gene_id "ENSG00000279064"; gene_version "1"; gene_name "FP236315.1"; gene_source "havana"; gene_biotype "lncRNA"; +21 havana transcript 696205 698657 . - . gene_id "ENSG00000279064"; gene_version "1"; transcript_id "ENST00000623723"; transcript_version "1"; gene_name "FP236315.1"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "FP236315.1-201"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "basic"; transcript_support_level "2"; +21 havana exon 696205 696358 . - . gene_id "ENSG00000279064"; gene_version "1"; transcript_id "ENST00000623723"; transcript_version "1"; exon_number "2"; gene_name "FP236315.1"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "FP236315.1-201"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756092"; exon_version "1"; tag "basic"; transcript_support_level "2";
--- a/test-data/rnastar_index2_versioned.loc Thu Nov 28 15:55:47 2019 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,4 +0,0 @@ -##STAR versioned indexes -#build_id dbkey display_name path with_gene_model version -000 ? test_index ${__HERE__}/test-cache/tophat-test 0 2.7.1a -001 ? test_index_with_gene_model ${__HERE__}/test-cache/tophat-test 1 2.7.1a
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/rnastar_index2x_versioned.loc Wed Aug 05 09:41:22 2020 -0400 @@ -0,0 +1,4 @@ +##STAR versioned indexes +#build_id dbkey display_name path with_gene_model version +000 ? test_index ${__HERE__}/test-cache/tophat-test 0 2.7.4a +001 ? test_index_with_gene_model ${__HERE__}/test-cache/tophat-test 1 2.7.4a
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test-cache/tophat-test/Log.out Wed Aug 05 09:41:22 2020 -0400 @@ -0,0 +1,50 @@ +STAR version=2.7.5a +STAR compilation time,server,dir=Tue Jun 16 12:17:16 EDT 2020 vega:/home/dobin/data/STAR/STARcode/STAR.master/source +##### Command Line: +STAR --runMode genomeGenerate --genomeDir tempstargenomedir --genomeFastaFiles tools/rgrnastar/test-data/tophat_test.fa --genomeSAindexNbases 5 +##### Initial USER parameters from Command Line: +###### All USER parameters from Command Line: +runMode genomeGenerate ~RE-DEFINED +genomeDir tempstargenomedir ~RE-DEFINED +genomeFastaFiles tools/rgrnastar/test-data/tophat_test.fa ~RE-DEFINED +genomeSAindexNbases 5 ~RE-DEFINED +##### Finished reading parameters from all sources + +##### Final user re-defined parameters-----------------: +runMode genomeGenerate +genomeDir tempstargenomedir +genomeFastaFiles tools/rgrnastar/test-data/tophat_test.fa +genomeSAindexNbases 5 + +------------------------------- +##### Final effective command line: +STAR --runMode genomeGenerate --genomeDir tempstargenomedir --genomeFastaFiles tools/rgrnastar/test-data/tophat_test.fa --genomeSAindexNbases 5 +---------------------------------------- + +Number of fastq files for each mate = 1 +Finished loading and checking parameters +--genomeDir directory created: tempstargenomedir/ +Jul 29 17:04:16 ... starting to generate Genome files +tools/rgrnastar/test-data/tophat_test.fa : chr # 0 "test_chromosome" chrStart: 0 +Estimated genome size=201262144 = 262144 + 201000000 +GstrandBit=32 +Number of SA indices: 1300 +Jul 29 17:04:16 ... starting to sort Suffix Array. This may take a long time... +Number of chunks: 1; chunks size limit: 18599685304 bytes +Jul 29 17:04:16 ... sorting Suffix Array chunks and saving them to disk... +Writing 10400 bytes into tempstargenomedir//SA_0 ; empty space on disk = 66320359424 bytes ... done +Jul 29 17:04:16 ... loading chunks from disk, packing SA... +Jul 29 17:04:16 ... finished generating suffix array +Jul 29 17:04:16 ... generating Suffix Array index +Jul 29 17:04:16 ... completed Suffix Array index +Jul 29 17:04:16 ... writing Genome to disk ... +Writing 262144 bytes into tempstargenomedir//Genome ; empty space on disk = 66320355328 bytes ... done +SA size in bytes: 5366 +Jul 29 17:04:16 ... writing Suffix Array to disk ... +Writing 5366 bytes into tempstargenomedir//SA ; empty space on disk = 66320093184 bytes ... done +Jul 29 17:04:16 ... writing SAindex to disk +Writing 8 bytes into tempstargenomedir//SAindex ; empty space on disk = 66320084992 bytes ... done +Writing 48 bytes into tempstargenomedir//SAindex ; empty space on disk = 66320084992 bytes ... done +Writing 5971 bytes into tempstargenomedir//SAindex ; empty space on disk = 66320084992 bytes ... done +Jul 29 17:04:16 ..... finished successfully +DONE: Genome generation, EXITING
--- a/test-data/test-cache/tophat-test/genomeParameters.txt Thu Nov 28 15:55:47 2019 -0500 +++ b/test-data/test-cache/tophat-test/genomeParameters.txt Wed Aug 05 09:41:22 2020 -0400 @@ -1,10 +1,13 @@ -### STAR --runMode genomeGenerate --genomeDir test-cache/tophat_test/ --genomeFastaFiles tophat_test.fa --genomeSAindexNbases 5 +### STAR --runMode genomeGenerate --genomeDir tempstargenomedir --genomeFastaFiles tools/rgrnastar/test-data/tophat_test.fa --genomeSAindexNbases 5 ### GstrandBit 32 -versionGenome 2.7.1a -genomeFastaFiles tophat_test.fa +versionGenome 2.7.4a +genomeType Full +genomeFastaFiles tools/rgrnastar/test-data/tophat_test.fa genomeSAindexNbases 5 genomeChrBinNbits 18 genomeSAsparseD 1 +genomeTransformType None +genomeTransformVCF - sjdbOverhang 0 sjdbFileChrStartEnd - sjdbGTFfile -
--- a/tool-data/rnastar_index2_versioned.loc.sample Thu Nov 28 15:55:47 2019 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,26 +0,0 @@ -#This is a sample file distributed with Galaxy that enables tools -#to use a directory of rna-star indexed sequences data files. You will -#need to create these data files and then create a rnastar_index2.loc -#file similar to this one (store it in this directory) that points to -#the directories in which those files are stored. The rnastar_index2.loc -#file has this format (longer white space characters are TAB characters): -# -#<unique_build_id> <dbkey> <display_name> <file_base_path> <with_gene_model> <version> -# -#The <with_gene_model> column should be 1 or 0, indicating whether the index -#was built with annotations (i.e., --sjdbGTFfile and --sjdbOverhang were used) -#or not. -# -#The <version> column indicates the STAR version that introduced the format of -#the index, i.e., the oldest STAR version that could make use of the index. -# -#Note that STAR indices can become quite large. Consequently, it is only -#advisable to create indices with annotations if it's known ahead of time that -#(A) the annotations won't be frequently updated and (B) the read lengths used -#will also rarely vary. If either of these is not the case, it's advisable to -#create indices without annotations and then specify an annotation file and -#maximum read length (minus 1) when running STAR. -# -#hg19 hg19 hg19 full /mnt/galaxyIndices/genomes/hg19/rnastar 0 2.7.1a -#hg19Ensembl hg19Ensembl hg19 full with Ensembl annotation /mnt/galaxyIndices/genomes/hg19Ensembl/rnastar 1 2.7.1a -
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/rnastar_index2x_versioned.loc.sample Wed Aug 05 09:41:22 2020 -0400 @@ -0,0 +1,27 @@ +#This is a sample file distributed with Galaxy that enables tools +#to use a directory of rna-star indexed sequences data files. +#You will need to create these data files and then create a +#rnastar_index2x_versioned.loc file similar to this one (store it in this +directory) that points to the directories in which those files are stored. +#The rnastar_index2x_versioned.loc file has this format (longer white space +#characters are TAB characters): +# +#<unique_build_id> <dbkey> <display_name> <file_base_path> <with_gene_model> <version> +# +#The <with_gene_model> column should be 1 or 0, indicating whether the index +#was built with annotations (i.e., --sjdbGTFfile and --sjdbOverhang were used) +#or not. +# +#The <version> column indicates the STAR version that introduced the format of +#the index, i.e., the oldest STAR version that could make use of the index. +# +#Note that STAR indices can become quite large. Consequently, it is only +#advisable to create indices with annotations if it's known ahead of time that +#(A) the annotations won't be frequently updated and (B) the read lengths used +#will also rarely vary. If either of these is not the case, it's advisable to +#create indices without annotations and then specify an annotation file and +#maximum read length (minus 1) when running STAR. +# +#hg19 hg19 hg19 full /mnt/galaxyIndices/genomes/hg19/rnastar 0 2.7.1a +#hg19Ensembl hg19Ensembl hg19 full with Ensembl annotation /mnt/galaxyIndices/genomes/hg19Ensembl/rnastar 1 2.7.1a +
--- a/tool_data_table_conf.xml.sample Thu Nov 28 15:55:47 2019 -0500 +++ b/tool_data_table_conf.xml.sample Wed Aug 05 09:41:22 2020 -0400 @@ -1,6 +1,6 @@ <tables> - <table name="rnastar_index2_versioned" comment_char="#" allow_duplicate_entries="False"> + <table name="rnastar_index2x_versioned" comment_char="#" allow_duplicate_entries="False"> <columns>value, dbkey, name, path, with_gene_model, version</columns> - <file path="tool-data/rnastar_index2_versioned.loc" /> + <file path="tool-data/rnastar_index2x_versioned.loc" /> </table> </tables>
--- a/tool_data_table_conf.xml.test Thu Nov 28 15:55:47 2019 -0500 +++ b/tool_data_table_conf.xml.test Wed Aug 05 09:41:22 2020 -0400 @@ -1,7 +1,7 @@ <tables> <!-- Location of rnastar indexes for testing --> - <table name="rnastar_index2_versioned" comment_char="#" allow_duplicate_entries="False"> + <table name="rnastar_index2x_versioned" comment_char="#" allow_duplicate_entries="False"> <columns>value, dbkey, name, path, with_gene_model, version</columns> - <file path="${__HERE__}/test-data/rnastar_index2_versioned.loc" /> + <file path="${__HERE__}/test-data/rnastar_index2x_versioned.loc" /> </table> </tables>