Mercurial > repos > iuc > samtools_markdup

diff test-data/stats.txt @ 3:d0a568e1904b draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
author iuc
date Tue, 28 Sep 2021 16:14:29 +0000
parents 83b8e36e9cbe
children
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--- a/test-data/stats.txt	Thu Apr 22 12:58:55 2021 +0000
+++ b/test-data/stats.txt	Tue Sep 28 16:14:29 2021 +0000
@@ -1,5 +1,16 @@
-READ 16 WRITTEN 16 
-EXCLUDED 3 EXAMINED 13
-PAIRED 10 SINGLE 3
-DULPICATE PAIR 4 DUPLICATE SINGLE 2
-DUPLICATE TOTAL 6
+COMMAND: samtools markdup -@ 0 -s coordsort.sam /tmp/tmpea8lprdd/files/2/2/4/dataset_224df993-f6bf-4c7d-99a1-2e9dd51c2a57.dat
+READ: 16
+WRITTEN: 16
+EXCLUDED: 3
+EXAMINED: 13
+PAIRED: 10
+SINGLE: 3
+DUPLICATE PAIR: 4
+DUPLICATE SINGLE: 2
+DUPLICATE PAIR OPTICAL: 0
+DUPLICATE SINGLE OPTICAL: 0
+DUPLICATE NON PRIMARY: 0
+DUPLICATE NON PRIMARY OPTICAL: 0
+DUPLICATE PRIMARY TOTAL: 6
+DUPLICATE TOTAL: 6
+ESTIMATED_LIBRARY_SIZE: 4