Mercurial > repos > iuc > samtools_markdup

view test-data/stats.txt @ 3:d0a568e1904b draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
author iuc
date Tue, 28 Sep 2021 16:14:29 +0000
parents 83b8e36e9cbe
children
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COMMAND: samtools markdup -@ 0 -s coordsort.sam /tmp/tmpea8lprdd/files/2/2/4/dataset_224df993-f6bf-4c7d-99a1-2e9dd51c2a57.dat
READ: 16
WRITTEN: 16
EXCLUDED: 3
EXAMINED: 13
PAIRED: 10
SINGLE: 3
DUPLICATE PAIR: 4
DUPLICATE SINGLE: 2
DUPLICATE PAIR OPTICAL: 0
DUPLICATE SINGLE OPTICAL: 0
DUPLICATE NON PRIMARY: 0
DUPLICATE NON PRIMARY OPTICAL: 0
DUPLICATE PRIMARY TOTAL: 6
DUPLICATE TOTAL: 6
ESTIMATED_LIBRARY_SIZE: 4