Mercurial > repos > iuc > samtools_merge
comparison test-data/rebuild_output_bams.sh @ 6:a7617eb92baf draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit c508c3af0f4121dcc38e0be63db00a604e997b8a
| author | iuc |
|---|---|
| date | Thu, 19 Jun 2025 13:00:31 +0000 |
| parents | |
| children |
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| 5:cae2794d2deb | 6:a7617eb92baf |
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| 1 samtools merge -s 1 -f 1.merge.expected.bam <(samtools sort -O sam test_input_1_a.sam) <(samtools sort -O sam test_input_1_b.sam) <(samtools sort -O sam test_input_1_c.sam) | |
| 2 samtools merge -s 1 -f 2.merge.expected.bam test_input_1_a.bam test_input_1_b.bam test_input_1_c.bam | |
| 3 samtools merge -s 1 -f 3.merge.expected.bam test_input_1_b.bam | |
| 4 samtools merge -s 1 -f -c -p 4.merge.expected.bam test_input_1_a.bam test_input_1_b.bam | |
| 5 samtools merge -s 1 -f 5.merge.expected.bam test_input_1_a_regex.sam test_input_1_b_regex.sam | |
| 6 samtools merge -s 1 -f -L test_input_1_a.bed 6.merge.expected.bam test_input_1_a.bam test_input_1_b.bam test_input_1_c.bam |