Mercurial > repos > iuc > samtools_merge

view test-data/rebuild_output_bams.sh @ 6:a7617eb92baf draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit c508c3af0f4121dcc38e0be63db00a604e997b8a
author iuc
date Thu, 19 Jun 2025 13:00:31 +0000
parents
children
line wrap: on
line source

samtools merge -s 1 -f 1.merge.expected.bam <(samtools sort -O sam test_input_1_a.sam) <(samtools sort -O sam test_input_1_b.sam)  <(samtools sort -O sam test_input_1_c.sam)
samtools merge -s 1 -f 2.merge.expected.bam test_input_1_a.bam test_input_1_b.bam test_input_1_c.bam
samtools merge -s 1 -f 3.merge.expected.bam test_input_1_b.bam 
samtools merge -s 1 -f -c -p 4.merge.expected.bam test_input_1_a.bam test_input_1_b.bam
samtools merge -s 1 -f 5.merge.expected.bam test_input_1_a_regex.sam test_input_1_b_regex.sam
samtools merge -s 1 -f -L test_input_1_a.bed 6.merge.expected.bam test_input_1_a.bam test_input_1_b.bam test_input_1_c.bam