Mercurial > repos > iuc > samtools_merge
diff test-data/rebuild_output_bams.sh @ 6:a7617eb92baf draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit c508c3af0f4121dcc38e0be63db00a604e997b8a
| author | iuc |
|---|---|
| date | Thu, 19 Jun 2025 13:00:31 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/rebuild_output_bams.sh Thu Jun 19 13:00:31 2025 +0000 @@ -0,0 +1,6 @@ +samtools merge -s 1 -f 1.merge.expected.bam <(samtools sort -O sam test_input_1_a.sam) <(samtools sort -O sam test_input_1_b.sam) <(samtools sort -O sam test_input_1_c.sam) +samtools merge -s 1 -f 2.merge.expected.bam test_input_1_a.bam test_input_1_b.bam test_input_1_c.bam +samtools merge -s 1 -f 3.merge.expected.bam test_input_1_b.bam +samtools merge -s 1 -f -c -p 4.merge.expected.bam test_input_1_a.bam test_input_1_b.bam +samtools merge -s 1 -f 5.merge.expected.bam test_input_1_a_regex.sam test_input_1_b_regex.sam +samtools merge -s 1 -f -L test_input_1_a.bed 6.merge.expected.bam test_input_1_a.bam test_input_1_b.bam test_input_1_c.bam