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comparison test-data/procrad/process_radtags_paired.out @ 0:1b6d07160736 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
author iuc
date Mon, 01 Jul 2019 10:57:08 -0400
parents
children 42201b90e3f4
comparison
equal deleted inserted replaced
-1:000000000000 0:1b6d07160736
1 process_radtags v2.2, executed 2018-11-23 13:35:34
2 process_radtags -p stacks_inputs/ --paired -i fastq -b /tmp/tmp2_xu5h/files/000/dataset_91.dat --len_limit 50 -D -y gzfasta --inline_null -e ecoRI -o stacks_outputs
3 File Retained Reads Low Quality Barcode Not Found RAD cutsite Not Found Total
4 reads_R1_0.fastq 9222 0 0 4778 14000
5
6 Total Sequences 14000
7 Barcode Not Found 0
8 Low Quality 0
9 RAD Cutsite Not Found 4778
10 Retained Reads 9222
11
12 Barcode Filename Total NoRadTag LowQuality Retained
13 ATGGGG PopA_01 320 94 0 226
14 GGGTAA PopA_02 292 86 0 206
15 AGGAAA PopA_03 448 132 0 316
16 TTTAAG PopA_04 336 146 0 190
17 GGTGTG PopA_05 440 154 0 286
18 TGATGT PopA_06 428 147 0 281
19 GGTTGT PopA_07 364 137 0 227
20 ATAAGT PopA_08 464 164 0 300
21 AAGATA PopA_09 364 134 0 230
22 TGTGAG PopA_10 336 128 0 208
23 ATAGTT PopA_11 400 132 0 268
24 GGAAGG PopA_12 356 136 0 220
25 TTTGTG PopA_13 380 152 0 228
26 TTAAAT PopA_14 332 96 0 236
27 AATAAG PopA_15 304 74 0 230
28 AAGAGG PopA_16 348 112 0 236
29 TAGTGT PopA_17 484 146 0 338
30 TGGAAG PopA_18 296 98 0 198
31 GGGTTG PopA_19 220 64 0 156
32 CATCAT PopA_20 356 144 0 212
33 GGAGAG PopB_20 420 142 0 278
34 GTTTTA PopB_01 272 90 0 182
35 TGATAA PopB_02 332 108 0 224
36 GTTGAT PopB_03 296 74 0 222
37 AGATTA PopB_04 360 156 0 204
38 GTATAG PopB_05 272 106 0 166
39 TTGGGA PopB_06 332 112 0 220
40 ATATAT PopB_07 484 156 0 328
41 GATGAG PopB_08 416 152 0 264
42 GGGAAT PopB_09 396 126 0 270
43 AGTAAT PopB_10 328 120 0 208
44 GGGATA PopB_11 292 90 0 202
45 GAGAAG PopB_12 324 110 0 214
46 AGTAGA PopB_13 408 146 0 262
47 AAGGAT PopB_14 360 128 0 232
48 AGGGTA PopB_15 268 72 0 196
49 TGTTTT PopB_16 276 98 0 178
50 ATGATG PopB_17 284 100 0 184
51 GAGTTA PopB_18 320 112 0 208
52 ATGTAG PopB_19 292 104 0 188
53
54 Sequences not recorded
55 Barcode Total