view test-data/procrad/process_radtags.out @ 5:42201b90e3f4 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
author iuc
date Thu, 14 Apr 2022 09:26:53 +0000
parents 1b6d07160736
children
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process_radtags v2.55, executed 2022-01-04 19:49:25 (zlib-1.2.11)
process_radtags -p stacks_inputs/ -i fastq -b /tmp/tmp1omqb2_d/files/2/a/2/dataset_2a2dd860-d29c-4b1a-9d82-80c8f91d4013.dat --inline_null -o stacks_outputs -e ecoRI
File	Retained Reads	Low Quality	Barcode Not Found	RAD cutsite Not Found	Total
R1_01.fastq	1375	0	0	801	2176
R1_02.fastq	97	0	0	2078	2175
R1_03.fastq	749	0	0	1427	2176
R1_04.fastq	0	0	0	470	470

Total Sequences	6997
Barcode Not Found	0
Low Quality	0
RAD Cutsite Not Found	4776
Retained Reads	2221

Barcode	Filename	Total	NoRadTag	LowQuality	Retained
ATGGGG	PopA_01	160	94	0	66
GGGTAA	PopA_02	146	86	0	60
AGGAAA	PopA_03	224	132	0	92
TTTAAG	PopA_04	168	146	0	22
GGTGTG	PopA_05	220	154	0	66
TGATGT	PopA_06	214	147	0	67
GGTTGT	PopA_07	182	137	0	45
ATAAGT	PopA_08	232	164	0	68
AAGATA	PopA_09	182	134	0	48
TGTGAG	PopA_10	168	128	0	40
ATAGTT	PopA_11	200	132	0	68
GGAAGG	PopA_12	178	136	0	42
TTTGTG	PopA_13	189	151	0	38
TTAAAT	PopA_14	166	96	0	70
AATAAG	PopA_15	152	74	0	78
AAGAGG	PopA_16	174	112	0	62
TAGTGT	PopA_17	242	146	0	96
TGGAAG	PopA_18	148	98	0	50
GGGTTG	PopA_19	110	64	0	46
CATCAT	PopA_20	178	144	0	34
GGAGAG	PopB_20	210	142	0	68
GTTTTA	PopB_01	136	90	0	46
TGATAA	PopB_02	166	108	0	58
GTTGAT	PopB_03	148	74	0	74
AGATTA	PopB_04	180	156	0	24
GTATAG	PopB_05	136	106	0	30
TTGGGA	PopB_06	166	112	0	54
ATATAT	PopB_07	242	156	0	86
GATGAG	PopB_08	208	152	0	56
GGGAAT	PopB_09	198	126	0	72
AGTAAT	PopB_10	164	120	0	44
GGGATA	PopB_11	146	90	0	56
GAGAAG	PopB_12	161	110	0	51
AGTAGA	PopB_13	204	146	0	58
AAGGAT	PopB_14	180	128	0	52
AGGGTA	PopB_15	134	72	0	62
TGTTTT	PopB_16	138	98	0	40
ATGATG	PopB_17	142	100	0	42
GAGTTA	PopB_18	159	111	0	48
ATGTAG	PopB_19	146	104	0	42

Sequences not recorded
Barcode	Total