Mercurial > repos > iuc > trinity_contig_exn50_statistic

changeset 12:34840e9c79b0 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 33aaad8d6afce20732d8232fbcd777a3aabf09ec"
author iuc
date Fri, 10 Sep 2021 22:43:27 +0000
parents b1e9a0355166
children beafdd47f8cf
files contig_exn50_statistic.xml macros.xml
diffstat 2 files changed, 8 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/contig_exn50_statistic.xml	Fri Mar 19 21:49:29 2021 +0000
+++ b/contig_exn50_statistic.xml	Fri Sep 10 22:43:27 2021 +0000
@@ -1,12 +1,14 @@
 <tool id="trinity_contig_exn50_statistic" name="Compute contig Ex90N50 statistic and Ex90 transcript count" version="@WRAPPER_VERSION@">
     <description>from a Trinity assembly</description>
+    <expand macro="bio_tools"/>
     <macros>
         <import>macros.xml</import>
     </macros>
     <expand macro="requirements" />
     <command detect_errors="aggressive"><![CDATA[
+    ln -s '$matrix' 'matrix.tabular' &&
     contig_ExN50_statistic.pl
-        '$matrix'
+        'matrix.tabular'
         '$transcripts'
         > '$output'
     ]]></command>
--- a/macros.xml	Fri Mar 19 21:49:29 2021 +0000
+++ b/macros.xml	Fri Sep 10 22:43:27 2021 +0000
@@ -6,7 +6,11 @@
             <yield/>
         </requirements>
     </xml>
-
+    <xml name="bio_tools">
+        <xrefs>
+            <xref type="bio.tools">trinity</xref>
+        </xrefs>
+    </xml>
     <token name="@WRAPPER_VERSION@">2.9.1</token>
 
     <token name="@COMMAND_PAIRED_STRAND_JACCARD@">