Mercurial > repos > iuc > umi_tools_extract

diff test-data/out_single.log @ 0:418b961e0576 draft

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planemo upload commit 453bb3b44d9f27908cbe2677378da88b9f77b5cf
author iuc
date Thu, 10 Aug 2017 06:37:09 -0400
parents
children 79436b3019e9
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out_single.log	Thu Aug 10 06:37:09 2017 -0400
@@ -0,0 +1,92 @@
+# output generated by extract --bc-pattern=XXXNNN --stdin=/home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_867.dat --stdout /home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_886.dat --3prime --quality-filter-threshold 10 --quality-encoding phred33 --log=/home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_887.dat
+# job started at Wed Aug  9 09:51:05 2017 on packer-test -- e5896848-87b1-4bf4-a96c-b7a4a83a0b8b
+# pid: 7652, system: Linux 4.4.0-83-generic #106-Ubuntu SMP Mon Jun 26 17:54:43 UTC 2017 x86_64
+# log2stderr                              : False
+# loglevel                                : 1
+# pattern                                 : XXXNNN
+# pattern2                                : None
+# prime3                                  : True
+# quality_encoding                        : phred33
+# quality_filter_threshold                : 10
+# random_seed                             : None
+# read2_in                                : None
+# read2_out                               : None
+# short_help                              : None
+# split                                   : False
+# stats                                   : True
+# stderr                                  : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
+# stdin                                   : <_io.TextIOWrapper name='/home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_867.dat' mode='r' encoding='UTF-8'>
+# stdlog                                  : <_io.TextIOWrapper name='/home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_887.dat' mode='a' encoding='UTF-8'>
+# stdout                                  : <_io.TextIOWrapper name='/home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_886.dat' mode='w' encoding='UTF-8'>
+# timeit_file                             : None
+# timeit_header                           : None
+# timeit_name                             : all
+Barcode	UMI	Sample	Count
+AAGTTA	TTA	AAG	1
+GGATTT	TTT	GGA	1
+GGATAG	TAG	GGA	1
+TTTTTT	TTT	TTT	4
+GAGAGG	AGG	GAG	1
+TTAGTT	GTT	TTA	1
+TGTAGA	AGA	TGT	1
+AGAGAT	GAT	AGA	1
+GAATAA	TAA	GAA	1
+TTGAGT	AGT	TTG	1
+TTTATT	ATT	TTT	1
+GTAAGG	AGG	GTA	1
+GAAGAG	GAG	GAA	1
+TGTTTG	TTG	TGT	1
+ATAATG	ATG	ATA	1
+TTAGAT	GAT	TTA	1
+GTCTGA	TGA	GTC	1
+ATCATC	ATC	ATC	1
+GTCACC	ACC	GTC	1
+AACTCC	TCC	AAC	1
+TTATTA	TTA	TTA	1
+TGTTGT	TGT	TGT	2
+GTTTAT	TAT	GTT	1
+ATGAGT	AGT	ATG	1
+ATAATT	ATT	ATA	1
+TTGGTT	GTT	TTG	1
+GTTTTG	TTG	GTT	1
+CACGTC	GTC	CAC	1
+TTGTGT	TGT	TTG	1
+TGAATT	ATT	TGA	1
+GGATGT	TGT	GGA	1
+AGTCAC	CAC	AGT	1
+GTTTTT	TTT	GTT	1
+TATAGT	AGT	TAT	1
+TTTTAT	TAT	TTT	1
+TAAAAA	AAA	TAA	1
+ATAGGT	GGT	ATA	1
+ATTTTA	TTA	ATT	1
+TGTATA	ATA	TGT	1
+TGTTTT	TTT	TGT	2
+AGATTT	TTT	AGA	1
+TAGAAT	AAT	TAG	1
+GAAGGA	GGA	GAA	1
+GTTTGA	TGA	GTT	1
+TTTTGT	TGT	TTT	1
+ATTTTT	TTT	ATT	1
+TGTTAT	TAT	TGT	1
+CAGGAT	GAT	CAG	1
+GTATTT	TTT	GTA	1
+TGGGTA	GTA	TGG	1
+AAAGTT	GTT	AAA	1
+GGTGTG	GTG	GGT	1
+AAGATC	ATC	AAG	1
+TAGGTT	GTT	TAG	1
+GAGTTA	TTA	GAG	1
+TTATTT	TTT	TTA	1
+GTTGTT	GTT	GTT	1
+AGGTTT	TTT	AGG	1
+TAAAGT	AGT	TAA	1
+AGTTTT	TTT	AGT	1
+TTTGAT	GAT	TTT	1
+ATAAAT	AAT	ATA	1
+GTTATT	ATT	GTT	1
+TTTTTA	TTA	TTT	1
+AAGTGT	TGT	AAG	1
+ATATAG	TAG	ATA	1
+TATAGA	AGA	TAT	1
+# job finished in 0 seconds at Wed Aug  9 09:51:05 2017 --  0.36  0.02  0.00  0.00 -- e5896848-87b1-4bf4-a96c-b7a4a83a0b8b