Mercurial > repos > iuc > umi_tools_extract

annotate test-data/out_single.log @ 0:418b961e0576 draft

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planemo upload commit 453bb3b44d9f27908cbe2677378da88b9f77b5cf
author iuc
date Thu, 10 Aug 2017 06:37:09 -0400
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children 79436b3019e9
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418b961e0576 planemo upload commit 453bb3b44d9f27908cbe2677378da88b9f77b5cf
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1 # output generated by extract --bc-pattern=XXXNNN --stdin=/home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_867.dat --stdout /home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_886.dat --3prime --quality-filter-threshold 10 --quality-encoding phred33 --log=/home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_887.dat
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2 # job started at Wed Aug 9 09:51:05 2017 on packer-test -- e5896848-87b1-4bf4-a96c-b7a4a83a0b8b
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3 # pid: 7652, system: Linux 4.4.0-83-generic #106-Ubuntu SMP Mon Jun 26 17:54:43 UTC 2017 x86_64
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4 # log2stderr : False
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5 # loglevel : 1
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6 # pattern : XXXNNN
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7 # pattern2 : None
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8 # prime3 : True
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9 # quality_encoding : phred33
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10 # quality_filter_threshold : 10
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11 # random_seed : None
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12 # read2_in : None
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13 # read2_out : None
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14 # short_help : None
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15 # split : False
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16 # stats : True
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17 # stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
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18 # stdin : <_io.TextIOWrapper name='/home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_867.dat' mode='r' encoding='UTF-8'>
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19 # stdlog : <_io.TextIOWrapper name='/home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_887.dat' mode='a' encoding='UTF-8'>
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20 # stdout : <_io.TextIOWrapper name='/home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_886.dat' mode='w' encoding='UTF-8'>
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21 # timeit_file : None
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22 # timeit_header : None
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23 # timeit_name : all
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24 Barcode UMI Sample Count
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25 AAGTTA TTA AAG 1
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26 GGATTT TTT GGA 1
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27 GGATAG TAG GGA 1
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28 TTTTTT TTT TTT 4
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29 GAGAGG AGG GAG 1
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30 TTAGTT GTT TTA 1
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31 TGTAGA AGA TGT 1
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32 AGAGAT GAT AGA 1
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33 GAATAA TAA GAA 1
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34 TTGAGT AGT TTG 1
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35 TTTATT ATT TTT 1
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36 GTAAGG AGG GTA 1
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37 GAAGAG GAG GAA 1
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38 TGTTTG TTG TGT 1
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39 ATAATG ATG ATA 1
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40 TTAGAT GAT TTA 1
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41 GTCTGA TGA GTC 1
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42 ATCATC ATC ATC 1
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43 GTCACC ACC GTC 1
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44 AACTCC TCC AAC 1
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45 TTATTA TTA TTA 1
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46 TGTTGT TGT TGT 2
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47 GTTTAT TAT GTT 1
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48 ATGAGT AGT ATG 1
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49 ATAATT ATT ATA 1
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50 TTGGTT GTT TTG 1
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51 GTTTTG TTG GTT 1
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52 CACGTC GTC CAC 1
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53 TTGTGT TGT TTG 1
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54 TGAATT ATT TGA 1
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55 GGATGT TGT GGA 1
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56 AGTCAC CAC AGT 1
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57 GTTTTT TTT GTT 1
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58 TATAGT AGT TAT 1
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59 TTTTAT TAT TTT 1
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60 TAAAAA AAA TAA 1
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61 ATAGGT GGT ATA 1
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62 ATTTTA TTA ATT 1
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63 TGTATA ATA TGT 1
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64 TGTTTT TTT TGT 2
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65 AGATTT TTT AGA 1
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66 TAGAAT AAT TAG 1
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67 GAAGGA GGA GAA 1
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68 GTTTGA TGA GTT 1
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69 TTTTGT TGT TTT 1
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70 ATTTTT TTT ATT 1
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71 TGTTAT TAT TGT 1
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72 CAGGAT GAT CAG 1
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73 GTATTT TTT GTA 1
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74 TGGGTA GTA TGG 1
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75 AAAGTT GTT AAA 1
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76 GGTGTG GTG GGT 1
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77 AAGATC ATC AAG 1
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78 TAGGTT GTT TAG 1
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79 GAGTTA TTA GAG 1
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80 TTATTT TTT TTA 1
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81 GTTGTT GTT GTT 1
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82 AGGTTT TTT AGG 1
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83 TAAAGT AGT TAA 1
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84 AGTTTT TTT AGT 1
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85 TTTGAT GAT TTT 1
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86 ATAAAT AAT ATA 1
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87 GTTATT ATT GTT 1
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88 TTTTTA TTA TTT 1
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89 AAGTGT TGT AAG 1
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90 ATATAG TAG ATA 1
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91 TATAGA AGA TAT 1
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92 # job finished in 0 seconds at Wed Aug 9 09:51:05 2017 -- 0.36 0.02 0.00 0.00 -- e5896848-87b1-4bf4-a96c-b7a4a83a0b8b