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view test-data/out_single.log @ 0:418b961e0576 draft

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planemo upload commit 453bb3b44d9f27908cbe2677378da88b9f77b5cf
author iuc
date Thu, 10 Aug 2017 06:37:09 -0400
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children 79436b3019e9
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# output generated by extract --bc-pattern=XXXNNN --stdin=/home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_867.dat --stdout /home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_886.dat --3prime --quality-filter-threshold 10 --quality-encoding phred33 --log=/home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_887.dat
# job started at Wed Aug  9 09:51:05 2017 on packer-test -- e5896848-87b1-4bf4-a96c-b7a4a83a0b8b
# pid: 7652, system: Linux 4.4.0-83-generic #106-Ubuntu SMP Mon Jun 26 17:54:43 UTC 2017 x86_64
# log2stderr                              : False
# loglevel                                : 1
# pattern                                 : XXXNNN
# pattern2                                : None
# prime3                                  : True
# quality_encoding                        : phred33
# quality_filter_threshold                : 10
# random_seed                             : None
# read2_in                                : None
# read2_out                               : None
# short_help                              : None
# split                                   : False
# stats                                   : True
# stderr                                  : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
# stdin                                   : <_io.TextIOWrapper name='/home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_867.dat' mode='r' encoding='UTF-8'>
# stdlog                                  : <_io.TextIOWrapper name='/home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_887.dat' mode='a' encoding='UTF-8'>
# stdout                                  : <_io.TextIOWrapper name='/home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_886.dat' mode='w' encoding='UTF-8'>
# timeit_file                             : None
# timeit_header                           : None
# timeit_name                             : all
Barcode	UMI	Sample	Count
AAGTTA	TTA	AAG	1
GGATTT	TTT	GGA	1
GGATAG	TAG	GGA	1
TTTTTT	TTT	TTT	4
GAGAGG	AGG	GAG	1
TTAGTT	GTT	TTA	1
TGTAGA	AGA	TGT	1
AGAGAT	GAT	AGA	1
GAATAA	TAA	GAA	1
TTGAGT	AGT	TTG	1
TTTATT	ATT	TTT	1
GTAAGG	AGG	GTA	1
GAAGAG	GAG	GAA	1
TGTTTG	TTG	TGT	1
ATAATG	ATG	ATA	1
TTAGAT	GAT	TTA	1
GTCTGA	TGA	GTC	1
ATCATC	ATC	ATC	1
GTCACC	ACC	GTC	1
AACTCC	TCC	AAC	1
TTATTA	TTA	TTA	1
TGTTGT	TGT	TGT	2
GTTTAT	TAT	GTT	1
ATGAGT	AGT	ATG	1
ATAATT	ATT	ATA	1
TTGGTT	GTT	TTG	1
GTTTTG	TTG	GTT	1
CACGTC	GTC	CAC	1
TTGTGT	TGT	TTG	1
TGAATT	ATT	TGA	1
GGATGT	TGT	GGA	1
AGTCAC	CAC	AGT	1
GTTTTT	TTT	GTT	1
TATAGT	AGT	TAT	1
TTTTAT	TAT	TTT	1
TAAAAA	AAA	TAA	1
ATAGGT	GGT	ATA	1
ATTTTA	TTA	ATT	1
TGTATA	ATA	TGT	1
TGTTTT	TTT	TGT	2
AGATTT	TTT	AGA	1
TAGAAT	AAT	TAG	1
GAAGGA	GGA	GAA	1
GTTTGA	TGA	GTT	1
TTTTGT	TGT	TTT	1
ATTTTT	TTT	ATT	1
TGTTAT	TAT	TGT	1
CAGGAT	GAT	CAG	1
GTATTT	TTT	GTA	1
TGGGTA	GTA	TGG	1
AAAGTT	GTT	AAA	1
GGTGTG	GTG	GGT	1
AAGATC	ATC	AAG	1
TAGGTT	GTT	TAG	1
GAGTTA	TTA	GAG	1
TTATTT	TTT	TTA	1
GTTGTT	GTT	GTT	1
AGGTTT	TTT	AGG	1
TAAAGT	AGT	TAA	1
AGTTTT	TTT	AGT	1
TTTGAT	GAT	TTT	1
ATAAAT	AAT	ATA	1
GTTATT	ATT	GTT	1
TTTTTA	TTA	TTT	1
AAGTGT	TGT	AAG	1
ATATAG	TAG	ATA	1
TATAGA	AGA	TAT	1
# job finished in 0 seconds at Wed Aug  9 09:51:05 2017 --  0.36  0.02  0.00  0.00 -- e5896848-87b1-4bf4-a96c-b7a4a83a0b8b