Mercurial > repos > iuc > vegan_diversity
changeset 2:db56c8e79b1e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vegan/vegan_diversity commit bfa8bda732de882f6fa5f5375f8468ad229cceea
| author | iuc |
|---|---|
| date | Mon, 07 Nov 2016 17:43:22 -0500 |
| parents | 2c771b437502 |
| children | a2c047a2c380 |
| files | test-data/output_diversity_index.tabular tool_dependencies.xml vegan_diversity.xml vegan_macros.xml |
| diffstat | 4 files changed, 7 insertions(+), 4 deletions(-) [+] |
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--- a/test-data/output_diversity_index.tabular Mon Feb 08 15:24:29 2016 -0500 +++ b/test-data/output_diversity_index.tabular Mon Nov 07 17:43:22 2016 -0500 @@ -1,2 +1,2 @@ x -1 1.58148247996845 +1 1.020620870138
--- a/tool_dependencies.xml Mon Feb 08 15:24:29 2016 -0500 +++ b/tool_dependencies.xml Mon Nov 07 17:43:22 2016 -0500 @@ -4,6 +4,6 @@ <repository changeset_revision="1ab514ba46e7" name="package_r_vegan_2_3_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="R" version="3.2.1"> - <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="d9f7d84125b7" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency>
--- a/vegan_diversity.xml Mon Feb 08 15:24:29 2016 -0500 +++ b/vegan_diversity.xml Mon Nov 07 17:43:22 2016 -0500 @@ -8,7 +8,8 @@ <expand macro="requirements" /> <expand macro="stdio" /> <expand macro="version_command" /> - <command><![CDATA[ + <command> + <![CDATA[ Rscript "${vegan_diversity_script}" ]]> </command> @@ -73,4 +74,4 @@ </help> <citations> </citations> -</tool> \ No newline at end of file +</tool>
--- a/vegan_macros.xml Mon Feb 08 15:24:29 2016 -0500 +++ b/vegan_macros.xml Mon Nov 07 17:43:22 2016 -0500 @@ -3,6 +3,8 @@ <requirements> <requirement type="package" version="3.2.1">R</requirement> <requirement type="package" version="2.3-0">vegan</requirement> + <!-- Conda dependency --> + <requirement type="package" version="2.3_0">r-vegan</requirement> <yield /> </requirements> </xml>