Mercurial > repos > jackcurragh > ribogalaxy_bowtie_rrna
changeset 15:1a0032ffccc8 draft
Uploaded
| author | jackcurragh |
|---|---|
| date | Tue, 05 Apr 2022 12:56:56 +0000 |
| parents | 6133b452e1af |
| children | 77219e2f7ddc |
| files | bowtie_rRNA_removal_wrapper/tool-data/bowtie_indices.loc bowtie_rRNA_removal_wrapper/tool-data/bowtie_indices.loc.sample |
| diffstat | 2 files changed, 23 insertions(+), 23 deletions(-) [+] |
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--- a/bowtie_rRNA_removal_wrapper/tool-data/bowtie_indices.loc Tue Apr 05 12:54:32 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,23 +0,0 @@ -sacCer9rRNA sacCer9 Saccharomyces cerevisiae rRNA /data2/indices/bowtie/ncRNA/sacCer_9/sacCer_9_rRNA -sacCer9tRNA sacCer9 Saccharomyces cerevisiae tRNA /data2/indices/bowtie/ncRNA/sacCer_9/sacCer_9_tRNA -sacCer9rRNAtRNA sacCer9 Saccharomyces cerevisiae rRNA and tRNA /data2/indices/bowtie/ncRNA/sacCer_9/sacCer_9_rRNA_tRNA - -hg38rRNA hg38 Homo sapiens rRNA /data2/indices/bowtie/ncRNA/homo_sapiens_hg38/homo_sapiens_hg38_rRNA -hg38tRNA hg38 Homo sapiens tRNA /data2/indices/bowtie/ncRNA/homo_sapiens_hg38/homo_sapiens_hg38_tRNA -hg38rRNAtRNA hg38 Homo sapiens rRNA and tRNA /data2/indices/bowtie/ncRNA/homo_sapiens_hg38/homo_sapiens_hg38_rRNA_tRNA - -e_colirRNA e_coli Escherichia coli rRNA /data2/indices/bowtie/ncRNA/E_coli_K12_MG1655/E_coli_K12_MG1655_rRNA -e_colitRNA e_coli Escherichia coli tRNA /data2/indices/bowtie/ncRNA/E_coli_K12_MG1655/E_coli_K12_MG1655_tRNA -e_colirRNAtRNA e_coli Escherichia coli rRNA and tRNA /data2/indices/bowtie/ncRNA/E_coli_K12_MG1655/E_coli_K12_MG1655_rRNA_tRNA - -dm6rRNA dm6 Drosophila melanogater rRNA /data2/indices/bowtie/ncRNA/drosophila_melanogater_dm6/drosophila_melanogater_dm6_rRNA -dm6tRNA dm6 Drosophila melanogater tRNA /data2/indices/bowtie/ncRNA/drosophila_melanogater_dm6/drosophila_melanogater_dm6_tRNA -dm6rRNAtRNA dm6 Drosophila melanogater rRNA and tRNA /data2/indices/bowtie/ncRNA/drosophila_melanogater_dm6/drosophila_melanogater_dm6_rRNA_tRNA - -m28rRNA m28 Mus musculus rRNA /data2/indices/bowtie/ncRNA/mus_musculus_m28/mus_musculus_m28_rRNA -m28tRNA m28 Mus musculus tRNA /data2/indices/bowtie/ncRNA/mus_musculus_m28/mus_musculus_m28_tRNA -m28rRNAtRNA m28 Mus musculus rRNA and tRNA /data2/indices/bowtie/ncRNA/mus_musculus_m28/mus_musculus_m28_rRNA_tRNA - -araThalrRNA araThal Arabidopsis thaliana (TAIR10) rRNA /data2/indices/bowtie/ncRNA/Arabidopsis/Arabidopsis_rRNA -araThaltRNA araThal Arabidopsis thaliana (TAIR10) tRNA /data2/indices/bowtie/ncRNA/Arabidopsis/Arabidopsis_tRNA -araThalrRNAtRNA araThal Arabidopsis thaliana (TAIR10) rRNA and tRNA /data2/indices/bowtie/ncRNA/Arabidopsis/Arabidopsis_rRNA_tRNA
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bowtie_rRNA_removal_wrapper/tool-data/bowtie_indices.loc.sample Tue Apr 05 12:56:56 2022 +0000 @@ -0,0 +1,23 @@ +sacCer9rRNA sacCer9 Saccharomyces cerevisiae rRNA /data2/indices/bowtie/ncRNA/sacCer_9/sacCer_9_rRNA +sacCer9tRNA sacCer9 Saccharomyces cerevisiae tRNA /data2/indices/bowtie/ncRNA/sacCer_9/sacCer_9_tRNA +sacCer9rRNAtRNA sacCer9 Saccharomyces cerevisiae rRNA and tRNA /data2/indices/bowtie/ncRNA/sacCer_9/sacCer_9_rRNA_tRNA + +hg38rRNA hg38 Homo sapiens rRNA /data2/indices/bowtie/ncRNA/homo_sapiens_hg38/homo_sapiens_hg38_rRNA +hg38tRNA hg38 Homo sapiens tRNA /data2/indices/bowtie/ncRNA/homo_sapiens_hg38/homo_sapiens_hg38_tRNA +hg38rRNAtRNA hg38 Homo sapiens rRNA and tRNA /data2/indices/bowtie/ncRNA/homo_sapiens_hg38/homo_sapiens_hg38_rRNA_tRNA + +e_colirRNA e_coli Escherichia coli rRNA /data2/indices/bowtie/ncRNA/E_coli_K12_MG1655/E_coli_K12_MG1655_rRNA +e_colitRNA e_coli Escherichia coli tRNA /data2/indices/bowtie/ncRNA/E_coli_K12_MG1655/E_coli_K12_MG1655_tRNA +e_colirRNAtRNA e_coli Escherichia coli rRNA and tRNA /data2/indices/bowtie/ncRNA/E_coli_K12_MG1655/E_coli_K12_MG1655_rRNA_tRNA + +dm6rRNA dm6 Drosophila melanogater rRNA /data2/indices/bowtie/ncRNA/drosophila_melanogater_dm6/drosophila_melanogater_dm6_rRNA +dm6tRNA dm6 Drosophila melanogater tRNA /data2/indices/bowtie/ncRNA/drosophila_melanogater_dm6/drosophila_melanogater_dm6_tRNA +dm6rRNAtRNA dm6 Drosophila melanogater rRNA and tRNA /data2/indices/bowtie/ncRNA/drosophila_melanogater_dm6/drosophila_melanogater_dm6_rRNA_tRNA + +m28rRNA m28 Mus musculus rRNA /data2/indices/bowtie/ncRNA/mus_musculus_m28/mus_musculus_m28_rRNA +m28tRNA m28 Mus musculus tRNA /data2/indices/bowtie/ncRNA/mus_musculus_m28/mus_musculus_m28_tRNA +m28rRNAtRNA m28 Mus musculus rRNA and tRNA /data2/indices/bowtie/ncRNA/mus_musculus_m28/mus_musculus_m28_rRNA_tRNA + +araThalrRNA araThal Arabidopsis thaliana (TAIR10) rRNA /data2/indices/bowtie/ncRNA/Arabidopsis/Arabidopsis_rRNA +araThaltRNA araThal Arabidopsis thaliana (TAIR10) tRNA /data2/indices/bowtie/ncRNA/Arabidopsis/Arabidopsis_tRNA +araThalrRNAtRNA araThal Arabidopsis thaliana (TAIR10) rRNA and tRNA /data2/indices/bowtie/ncRNA/Arabidopsis/Arabidopsis_rRNA_tRNA