Mercurial > repos > jackcurragh > ribogalaxy_bowtie_rrna
changeset 7:d3c89fb66c4d draft
Uploaded
| author | triasteran |
|---|---|
| date | Wed, 23 Mar 2022 11:27:53 +0000 |
| parents | 3ccba3a4cf44 |
| children | 8ae1d397d66d |
| files | bowtie_rRNA_removal_wrapper/bowtie_rRNA_removal_wrapper.xml bowtie_rRNA_removal_wrapper/tool-data/bowtie_indices.loc.sample bowtie_rRNA_removal_wrapper/tool_data_table_conf.xml.sample |
| diffstat | 3 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/bowtie_rRNA_removal_wrapper/bowtie_rRNA_removal_wrapper.xml Mon Mar 21 12:55:42 2022 +0000 +++ b/bowtie_rRNA_removal_wrapper/bowtie_rRNA_removal_wrapper.xml Wed Mar 23 11:27:53 2022 +0000 @@ -1,4 +1,4 @@ -<tool id="bowtie_rRNA_removal_wrapper" name="Remove rRNA using Bowtie" version="1.4.0"> +<tool id="bowtie_rRNA_removal_wrapper" name="Remove rRNA using Bowtie" version="1.4.0a"> <description></description> <requirements> <requirement type="package" version="1.2.0">bowtie</requirement>
--- a/bowtie_rRNA_removal_wrapper/tool-data/bowtie_indices.loc.sample Mon Mar 21 12:55:42 2022 +0000 +++ b/bowtie_rRNA_removal_wrapper/tool-data/bowtie_indices.loc.sample Wed Mar 23 11:27:53 2022 +0000 @@ -1,1 +1,1 @@ -yeast_rRNA yeast_test yeast_rRNA ${__HERE__}/indexes/yeast_rRNA \ No newline at end of file +sacCer3_rRNA sacCer3_rRNA sacCer3_rRNA /home/alla/indices/sacCer3_rRNA_bowtie/yeast_rRNA \ No newline at end of file
--- a/bowtie_rRNA_removal_wrapper/tool_data_table_conf.xml.sample Mon Mar 21 12:55:42 2022 +0000 +++ b/bowtie_rRNA_removal_wrapper/tool_data_table_conf.xml.sample Wed Mar 23 11:27:53 2022 +0000 @@ -3,6 +3,6 @@ <!-- Locations of indexes in the Bowtie mapper format --> <table name="bowtie_indexes" comment_char="#"> <columns>value, dbkey, name, path</columns> - <file path="${__HERE__}/tool-data/bowtie_indices.loc.sample" /> + <file path="tool-data/bowtie_indices.loc.sample" /> </table> </tables>