annotate test-data/blast xml example4b.html @ 128:82b8c9722996 default tip

Add links to github and bitbucket
author Jan Kanis <jan.code@jankanis.nl>
date Thu, 23 Jul 2015 12:24:40 +0200
parents 7f3f8c10f44b
children
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1 <!DOCTYPE html>
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2 <html>
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3 <head>
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4 <meta charset="UTF-8">
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5 <meta name=generator content="blast2html; see https://github.com/thehyve/blast2html/">
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6
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7 <title>Blast output</title>
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8
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9 <style>
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10 body {
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11 color: #333333;
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12 font-family: Arial,Sans-Serif;
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13 }
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14
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15 :link {
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16 color: #336699;
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17 }
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18
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19 .right {
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20 float: right;
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21 }
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22
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23 /* Galaxy with html sanitization enabled strips the header of this html page. If so, show the user a warning.*/
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24 #strip_html_warning {
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25 display: none;
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26 }
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27
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28 #content {
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29 margin: 0 2em;
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30 padding: 0.5em;
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31 border: 1px solid #888888;
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32 background-color: #d3dff5;
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33 }
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34
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35 h1, h2, h3, h4, h5, h6 {
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36 color: #2A6979;
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37 font-family: arial,verdana,sans-serif;
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38 letter-spacing: -1px;
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39 margin: 1.2em 0 0.3em;
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40 }
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41
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42 h1 {
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43 font-size: 200%;
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44 }
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45
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46 h2 {
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47 font-size: 150%;
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48 }
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49
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50 h1, h2 {
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51 border-bottom: 1px solid #CCCCCC;
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52 padding-bottom: 0.1em;
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53 }
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55 h3 {
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56 font-size: 120%;
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57 font-weight: bold;
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58 }
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59
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60 h5.darkHeader {
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61 color: #4D4D4D;
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62 letter-spacing: 0;
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63 font-weight: bold;
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64 font-size: 108%;
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65 }
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66
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67 #nodata {
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68 font-weight: bold;
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69 }
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71 .index {
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72 margin-bottom: 3em;
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73 }
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74 .index div.indexentry {
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75 margin: 1.2em 1.6em;
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76 font-weight: bold;
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77 font-size: 100%;
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78 }
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79
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80 .headerdata {
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81 font-size: 90%;
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82 }
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83 .headerdata .param {
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84 font-weight: bold;
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85 text-align: right;
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86 padding: 0 1em;
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87 }
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89 .grey {
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90 background-color: #eeeeee;
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91 border: 1px solid #cccccc;
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92 padding: 1em;
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93 }
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95 .white {
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96 background-color: white;
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97 border: 1px solid #cccccc;
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98 padding: 1.5em 2%;
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99 }
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101 .graphicrow {
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102 clear: left;
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103 width: 100%;
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104 }
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106 .graphicitem {
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107 float: left;
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108 }
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111
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112 .graphics .grey {
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113 text-align: center;
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114 }
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115
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116 .graphic {
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117 background-color: white;
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118 border: 2px solid black;
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119 padding: 1.5em;
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120 margin: auto;
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121 }
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122
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123 .centered, .defline, div.legend, div.tablewrapper {
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124 margin-left: auto;
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125 margin-right: auto;
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126 }
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127
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128 .defline {
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129 background-color: white;
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130 border: 1px solid black;
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131 margin: .5em auto;
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132 padding-left: .2em;
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133 padding-right: .2em;
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134 max-width: 50em;
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135 text-align: left;
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136 height: 2.8em;
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137 overflow: hidden;
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138 }
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140 div.legend {
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141 max-width: 40em;
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142 }
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143 div.legend div {
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144 width: 100%;
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145 color: white;
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146 font-weight: bold;
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147 border-spacing: 0;
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148 }
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149 div.legend div .graphicitem {
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150 width: 20%;
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151 padding: 0;
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152 margin: 0;
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153 border: none;
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154 }
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155
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156 div.tablewrapper {
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157 width: 50%;
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158 min-width: 60em;
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159 }
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160
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161 /* For small widths we give the graphic 100% */
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162 @media (max-width: 72.5em) {
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163 div.tablewrapper {
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164 width: 100%;
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165 min-width: 0px;
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166 }
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167 }
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169 .scale {
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170 width: 100%;
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171 margin: .5em 0;
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172 font-weight: bold;
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173 }
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174 .scale div {
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175 color: red;
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176 text-align: left;
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177 }
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178 .scale .graphicrow {
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179 margin: .5em 0 .5em 0;
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diff changeset
180 color: white;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
181 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
182 .scale .graphicitem {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
183 position: relative;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
184 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
185 .scale .graphicitem div {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
186 margin: 0 1px;
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Jan Kanis <jan.code@jankanis.nl>
parents:
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187 padding: 0 2px;
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Jan Kanis <jan.code@jankanis.nl>
parents:
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188 text-align: right;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
189 background-color: red;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
190 color: white;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
191 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
192 .scale .graphicitem:first-child div {
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Jan Kanis <jan.code@jankanis.nl>
parents:
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193 margin-left: 0px;
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Jan Kanis <jan.code@jankanis.nl>
parents:
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194 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
195 .scale .graphicitem:last-child div {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
196 margin-right: 0px;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
197 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
198 .scale .graphicitem .lastlabel {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
199 position: absolute;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
200 top: 0px;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
201 left: 100%;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
202 background-color: transparent;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
203 color: red;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
204 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
205
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
206 a.matchresult {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
207 display: block;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
208 margin: 0;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
209 padding: 0;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
210 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
211 div.matchrow {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
212 margin-top: 4px;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
213 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
214 div.matchrow, div.matchitem {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
215 height: 4px;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
216 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
217
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Jan Kanis <jan.code@jankanis.nl>
parents:
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218
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
219 table.descriptiontable {
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Jan Kanis <jan.code@jankanis.nl>
parents:
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220 font-size: 85%;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
221 border: 1px solid #97b0c8;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
222 border-spacing: 0;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
223 color: #222222;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
224 line-height: 1.3em;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
225 background-color: white;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
226 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
227 table.descriptiontable col:first-child {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
228 width: 100%;
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Jan Kanis <jan.code@jankanis.nl>
parents:
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229 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
230 table.descriptiontable tr:hover {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
231 background-color: #D5DEE3;
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Jan Kanis <jan.code@jankanis.nl>
parents:
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232 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
233 table.descriptiontable th {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
234 color: #14376C;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
235 font-weight: normal;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
236 background-color: #F0F0F0;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
237 background: linear-gradient(#FFFFFF, #F0F0F0);
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
238 border-bottom: 1px solid #D4DFE9;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
239 border-right: 1px solid #CFCFCF;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
240 border-left: 0px solid black;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
241 border-top: 0px solid black;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
242 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
243 table.descriptiontable td {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
244 overflow: hidden;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
245 text-align: center;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
246 padding: .4em .8em;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
247 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
248 table.descriptiontable td div {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
249 width: 1em;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
250 overflow: visible;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
251 white-space: nowrap;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
252 text-align: left;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
253 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
254
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
255
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
256
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
257 .alignments .white {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
258 padding: 1.5em 1em;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
259 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
260
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
261 .alignment {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
262 border-top: 1px solid black;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
263 padding-left: 1em;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
264 padding-right: 1em;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
265 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
266
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
267 div.linkheader {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
268 padding-top: .2em;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
269 font-size: 85%;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
270 color: #14376C;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
271 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
272 div.linkheader a.linkheader {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
273 margin-right: 1em;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
274 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
275 div.linkheader .right a {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
276 text-decoration: none;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
277 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
278
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
279 .title .hittitle {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
280 color: #222222;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
281 margin-bottom: .3em;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
282 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
283 .title .titleinfo {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
284 font-size: 80%;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
285 margin-top: 0;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
286 margin-bottom: .3em;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
287 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
288 .title .titleinfo .b {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
289 color: #606060;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
290 font-weight: bold;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
291 font-size: 90%;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
292 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
293
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
294 .moretitles {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
295 margin: 1.2em;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
296 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
297 .moretitles .titleinfo {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
298 margin: 0;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
299 padding: 0;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
300 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
301 .moretitles .hittitle {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
302 margin: .4em 0 .2em 0;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
303 padding: 0;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
304 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
305
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
306 a.showmoretitles {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
307 font-size: 75%;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
308 color: #336699;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
309 font-weight: bold;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
310 margin-top: 0;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
311 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
312 a.showmoretitles:hover {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
313 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
314
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
315 .hotspot {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
316 color: #606060;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
317 font-family: verdana, arial, sans-serif;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
318 margin-bottom: 2.5em;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
319 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
320
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
321 .hotspot p.range {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
322 font-size: 70%;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
323 margin-top: 0;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
324 margin-top: 1em;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
325 margin-bottom: .2em;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
326 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
327 .hotspot p.range span.range {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
328 font-weight: bold;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
329 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
330 .hotspot p.range a.range {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
331 margin-left: .5em;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
332 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
333
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
334 table.hotspotstable {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
335 border-top: 1px solid;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
336 border-bottom: 1px solid;
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
337 text-align: left;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
338 border-collapse: collapse;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
339 }
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
340 table.hotspotstable th, table.hotspotstable td {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
341 padding: .1em 1em;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
342 }
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
343 table.hotspotstable th {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
344 font-size: 70%;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
345 }
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
346 table.hotspotstable td {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
347 min-width: 7em;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
348 color: #222222;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
349 font-size: 80%;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
350 }
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
351
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
352 pre.alignmentgraphic {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
353 color: #222222;
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
354 }
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
355
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
356 footer {
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
357 text-align: center;
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
358 color: #cccccc;
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
359 font-size: 70%;
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
360 margin-top: 1em;
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Jan Kanis <jan.code@jankanis.nl>
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361 }
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362 footer :link {
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363 color: #5588cc;
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364 }
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365
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366 </style>
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367
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368 <script type="text/javascript">
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369 function toggle_visibility(id) {
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370 var e = document.getElementById(id);
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371 if(e.style.display != 'block')
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372 e.style.display = 'block';
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373 else
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374 e.style.display = 'none';
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375 }
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376 </script>
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377
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378 </head>
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379
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380
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381 <body>
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382
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383 <div id="strip_html_warning">
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384 <!-- This div should be hidden by the header css block. Galaxy
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385 strips all css, breaking this page but making this warning
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386 visible. This warning contains some ugly old skool tabular html
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387 layout that is not stripped. -->
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388 <table bgcolor="#FFE5C9"><tr><td><font color="red"><b>
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389 <font size=5><center>This html page seems to have been stripped by Galaxy.</center></font>
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390 Disable Galaxy's html sanitization feature to view the full page (see <font face=monospace>sanitize_all_html</font> in your galaxy's universe_wsgi.ini), or download this page instead of viewing it in Galaxy.
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391 </b></font></td></tr></table>
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392 </div>
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393
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394 <div id=content>
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395
114
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396 <section class=header>
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397
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398 <h1>Nucleotide Blast results</h1>
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399
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400 <table class=headerdata>
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401 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
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402 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
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403 </table>
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404
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405 </section>
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406
106
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407
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408 <section class=index>
114
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409 <h2>Queries</h2>
106
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410
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411 <div class=indexentry><a href="#match1">
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Jan Kanis <jan.code@jankanis.nl>
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412 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
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Jan Kanis <jan.code@jankanis.nl>
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413 (20 letters, 2 hits)
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414 </a></div>
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415 <div class=indexentry><a href="#match2">
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416 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
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Jan Kanis <jan.code@jankanis.nl>
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417 (20 letters, 0 hits)
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
418 </a></div>
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Jan Kanis <jan.code@jankanis.nl>
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419 <div class=indexentry><a href="#match3">
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Jan Kanis <jan.code@jankanis.nl>
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420 Query_3: Probe|NOST-Spec_(Genetic_ID)
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421 (20 letters, 3 hits)
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Jan Kanis <jan.code@jankanis.nl>
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422 </a></div>
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Jan Kanis <jan.code@jankanis.nl>
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423 <div class=indexentry><a href="#match4">
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424 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
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Jan Kanis <jan.code@jankanis.nl>
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425 (24 letters, 0 hits)
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
426 </a></div>
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Jan Kanis <jan.code@jankanis.nl>
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427 <div class=indexentry><a href="#match5">
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428 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
429 (20 letters, 0 hits)
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
430 </a></div>
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Jan Kanis <jan.code@jankanis.nl>
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431 <div class=indexentry><a href="#match6">
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Jan Kanis <jan.code@jankanis.nl>
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432 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
433 (25 letters, 2 hits)
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
434 </a></div>
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
435 <div class=indexentry><a href="#match7">
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Jan Kanis <jan.code@jankanis.nl>
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436 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
437 (74 letters, 2 hits)
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
438 </a></div>
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Jan Kanis <jan.code@jankanis.nl>
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439
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Jan Kanis <jan.code@jankanis.nl>
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440 </section>
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Jan Kanis <jan.code@jankanis.nl>
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441
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Jan Kanis <jan.code@jankanis.nl>
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442
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Jan Kanis <jan.code@jankanis.nl>
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443 <section class=match id=match1>
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444
114
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diff changeset
445 <h2>Nucleotide Sequence (20 letters)</h2>
106
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446
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447 <section class=header>
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Jan Kanis <jan.code@jankanis.nl>
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448
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449 <table class=headerdata>
114
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450 <tr><td class=param>Query number:</td><td>1</td></tr>
106
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451 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
114
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452 <tr><td class=param>Definition line:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
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453 <tr><td class=param>Length:</td><td>20</td></tr>
106
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454 </table>
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455
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456 </section>
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Jan Kanis <jan.code@jankanis.nl>
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457
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Jan Kanis <jan.code@jankanis.nl>
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458
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459 <section class=graphics>
114
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460 <h3>Graphic Summary</h3>
106
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461
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462 <div class=grey>
114
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463 <h4 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h4>
106
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464
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465 <div class=defline id=defline1>
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Jan Kanis <jan.code@jankanis.nl>
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466 Mouse-over to show defline and scores, click to show alignments
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Jan Kanis <jan.code@jankanis.nl>
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467 </div>
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Jan Kanis <jan.code@jankanis.nl>
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468
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469 <div class=graphic>
114
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diff changeset
470 <h5 class=darkHeader>Color key for alignment scores</h5>
106
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471 <div class=legend><div class=graphicrow>
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472 <div class=graphicitem style="background-color: black">&lt;40</div>
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Jan Kanis <jan.code@jankanis.nl>
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473 <div class=graphicitem style="background-color: blue">40–50</div>
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Jan Kanis <jan.code@jankanis.nl>
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474 <div class=graphicitem style="background-color: green">50–80</div>
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475 <div class=graphicitem style="background-color: magenta">80–200</div>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
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diff changeset
476 <div class=graphicitem style="background-color: red">≥200</div>
106
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477 </div></div>
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Jan Kanis <jan.code@jankanis.nl>
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478 <div style="clear: left"></div>
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Jan Kanis <jan.code@jankanis.nl>
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479
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Jan Kanis <jan.code@jankanis.nl>
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480 <div class=tablewrapper>
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481
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482 <div class=scale>
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Jan Kanis <jan.code@jankanis.nl>
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483 <div>query:</div>
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Jan Kanis <jan.code@jankanis.nl>
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484 <div class=graphicrow>
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485 <div>
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486 <div class=graphicitem style="width: 10%">
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487 <div>2</div>
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Jan Kanis <jan.code@jankanis.nl>
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488 </div>
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Jan Kanis <jan.code@jankanis.nl>
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489 <div class=graphicitem style="width: 10%">
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Jan Kanis <jan.code@jankanis.nl>
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490 <div>4</div>
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
491 </div>
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Jan Kanis <jan.code@jankanis.nl>
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492 <div class=graphicitem style="width: 10%">
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Jan Kanis <jan.code@jankanis.nl>
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493 <div>6</div>
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
494 </div>
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
495 <div class=graphicitem style="width: 10%">
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Jan Kanis <jan.code@jankanis.nl>
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496 <div>8</div>
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
497 </div>
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Jan Kanis <jan.code@jankanis.nl>
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498 <div class=graphicitem style="width: 10%">
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Jan Kanis <jan.code@jankanis.nl>
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499 <div>10</div>
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
500 </div>
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
501 <div class=graphicitem style="width: 10%">
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Jan Kanis <jan.code@jankanis.nl>
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502 <div>12</div>
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
503 </div>
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Jan Kanis <jan.code@jankanis.nl>
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504 <div class=graphicitem style="width: 10%">
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Jan Kanis <jan.code@jankanis.nl>
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505 <div>14</div>
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
506 </div>
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
507 <div class=graphicitem style="width: 10%">
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Jan Kanis <jan.code@jankanis.nl>
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508 <div>16</div>
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
509 </div>
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
510 <div class=graphicitem style="width: 10%">
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Jan Kanis <jan.code@jankanis.nl>
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511 <div>18</div>
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
512 </div>
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
513 <div class=graphicitem style="width: 10%">
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Jan Kanis <jan.code@jankanis.nl>
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514 <div>20</div>
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Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
515 </div>
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Jan Kanis <jan.code@jankanis.nl>
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516 </div>
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
517 </div>
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
518 <div style="clear: left"></div>
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Jan Kanis <jan.code@jankanis.nl>
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519 </div>
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
520
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
521 <a class=matchresult
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diff changeset
522 href="#hit1-1"
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Jan Kanis <jan.code@jankanis.nl>
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523 onmouseover='document.getElementById("defline1").innerHTML="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"'
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parents:
diff changeset
524 onmouseout='document.getElementById("defline1").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
525 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
526 <div class="matchrow graphicrow">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
527 <div class="matchitem graphicitem"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
528 style="background-color: black; width: 100%"></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
529 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
530 </a>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
531
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
532 <a class=matchresult
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
533 href="#hit1-2"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
534 onmouseover='document.getElementById("defline1").innerHTML="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"'
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
535 onmouseout='document.getElementById("defline1").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
536 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
537 <div class="matchrow graphicrow">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
538 <div class="matchitem graphicitem"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
539 style="background-color: black; width: 100%"></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
540 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
541 </a>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
542
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
543 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
544 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
545 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
546 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
547
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
548
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
549
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
550 <section class=descriptions>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
551 <h3>Descriptions</h3>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
552
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
553 <div class=grey><div class=white>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
554 <h5 class=darkHeader>Sequences producing significant alignments:</h5>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
555
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
556 <table class=descriptiontable>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
557 <col/><col/><col/><col/><col/><col/><col/>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
558 <tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
559 <th>Description</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
560 <th>Max score</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
561 <th>Total score</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
562 <th>Query cover</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
563 <th>E value</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
564 <th>Ident</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
565 <th>Accession</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
566 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
567 <tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
568 <td><div><a href="#hit1-1"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
569 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
570 id="description1-1">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
571 AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
572 </a></div></td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
573 <td>40.1</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
574 <td>40.1</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
575 <td>100%</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
576 <td>1.513e-07</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
577 <td>100%</td>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
578 <td><a target="_top" href="http://example.com/example-genebank/AB209952.1/">5</a></td>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
579 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
580 <tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
581 <td><div><a href="#hit1-2"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
582 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
583 id="description1-2">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
584 DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
585 </a></div></td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
586 <td>40.1</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
587 <td>40.1</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
588 <td>100%</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
589 <td>1.513e-07</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
590 <td>100%</td>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
591 <td><a target="_top" href="http://example.com/example-genebank/DJ437711/">2</a></td>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
592 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
593 </table>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
594
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
595 </div></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
596 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
597
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
598
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
599
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
600 <section class=alignments>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
601 <h3>Alignments</h3>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
602
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
603 <div class=grey><div class=white>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
604 <div class=alignment id=hit1-1>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
605
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
606 <div class=linkheader>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
607 <div class=right><a href="#description1-1">Descriptions</a></div>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
608 <a class="linkheader" target="_top" href="http://example.com/example-genebank/AB209952.1/">Example Gene Bank</a>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
609 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
610
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
611 <div class=title>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
612 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
613 <p class=titleinfo>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
614 <span class=b>Sequence ID:</span> <a target="_top" href="http://example.com/example-genebank/AB209952.1/">gnl|BL_ORD_ID|5</a>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
615 <span class=b>Length:</span> 2457
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
616 <span class=b>Number of Matches:</span> 1
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
617 </p>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
618 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
619
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
620
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
621 <div class=hotspot id=hotspot1-1-1>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
622 <p class=range>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
623 <span class=range>Range 1: 2119 to 2138</span>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
624 </p>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
625
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
626 <table class=hotspotstable>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
627 <tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
628 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
629 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
630 <tr>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
631 <td>40.14 bits (20)</td>
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
632 <td>1.51296e-07</td>
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
633 <td>20/20 (100%)</td>
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
634 <td>0/20 (0%)</td>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
635 <td>Plus/Plus</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
636 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
637 </table>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
638
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
639 <pre class=alignmentgraphic>Query 1 AGCGCGCAAACTAGGATAAA 20
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
640 ||||||||||||||||||||
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
641 Subject 2119 AGCGCGCAAACTAGGATAAA 2138</pre>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
642 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
643
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
644 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
645
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
646 <div class=alignment id=hit1-2>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
647
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
648 <div class=linkheader>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
649 <div class=right><a href="#description1-2">Descriptions</a></div>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
650 <a class="linkheader" target="_top" href="http://example.com/example-genebank/DJ437711/">Example Gene Bank</a>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
651 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
652
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
653 <div class=title>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
654 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
655 <p class=titleinfo>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
656 <span class=b>Sequence ID:</span> <a target="_top" href="http://example.com/example-genebank/DJ437711/">gnl|BL_ORD_ID|2</a>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
657 <span class=b>Length:</span> 323
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
658 <span class=b>Number of Matches:</span> 1
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
659 </p>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
660 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
661
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
662
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
663 <div class=hotspot id=hotspot1-2-1>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
664 <p class=range>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
665 <span class=range>Range 1: 200 to 219</span>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
666 </p>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
667
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
668 <table class=hotspotstable>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
669 <tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
670 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
671 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
672 <tr>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
673 <td>40.14 bits (20)</td>
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
674 <td>1.51296e-07</td>
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
675 <td>20/20 (100%)</td>
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
676 <td>0/20 (0%)</td>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
677 <td>Plus/Plus</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
678 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
679 </table>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
680
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
681 <pre class=alignmentgraphic>Query 1 AGCGCGCAAACTAGGATAAA 20
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
682 ||||||||||||||||||||
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
683 Subject 200 AGCGCGCAAACTAGGATAAA 219</pre>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
684 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
685
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
686 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
687
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
688 </div></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
689 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
690 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
691
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
692 <section class=match id=match2>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
693
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
694 <h2>Nucleotide Sequence (20 letters)</h2>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
695
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
696 <section class=header>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
697
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
698 <table class=headerdata>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
699 <tr><td class=param>Query number:</td><td>2</td></tr>
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
700 <tr><td class=param>Query ID:</td><td>Query_2</td></tr>
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
701 <tr><td class=param>Definition line:</td><td>Reverse_Primer|NOST-Spec_(Genetic_ID)</td></tr>
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
702 <tr><td class=param>Length:</td><td>20</td></tr>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
703 </table>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
704
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
705 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
706
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
707 <section>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
708 <h3>No Hits</h3>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
709 <div class=grey>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
710 <table class=headerdata>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
711 <tr><td class=param>Message:</td><td>No hits found</td></tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
712 </table>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
713 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
714 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
715 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
716
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
717 <section class=match id=match3>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
718
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
719 <h2>Nucleotide Sequence (20 letters)</h2>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
720
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
721 <section class=header>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
722
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
723 <table class=headerdata>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
724 <tr><td class=param>Query number:</td><td>3</td></tr>
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
725 <tr><td class=param>Query ID:</td><td>Query_3</td></tr>
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
726 <tr><td class=param>Definition line:</td><td>Probe|NOST-Spec_(Genetic_ID)</td></tr>
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
727 <tr><td class=param>Length:</td><td>20</td></tr>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
728 </table>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
729
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
730 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
731
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
732
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
733 <section class=graphics>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
734 <h3>Graphic Summary</h3>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
735
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
736 <div class=grey>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
737 <h4 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h4>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
738
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
739 <div class=defline id=defline3>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
740 Mouse-over to show defline and scores, click to show alignments
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
741 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
742
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
743 <div class=graphic>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
744 <h5 class=darkHeader>Color key for alignment scores</h5>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
745 <div class=legend><div class=graphicrow>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
746 <div class=graphicitem style="background-color: black">&lt;40</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
747 <div class=graphicitem style="background-color: blue">40–50</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
748 <div class=graphicitem style="background-color: green">50–80</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
749 <div class=graphicitem style="background-color: magenta">80–200</div>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
750 <div class=graphicitem style="background-color: red">≥200</div>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
751 </div></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
752 <div style="clear: left"></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
753
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
754 <div class=tablewrapper>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
755
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
756 <div class=scale>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
757 <div>query:</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
758 <div class=graphicrow>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
759 <div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
760 <div class=graphicitem style="width: 10%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
761 <div>2</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
762 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
763 <div class=graphicitem style="width: 10%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
764 <div>4</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
765 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
766 <div class=graphicitem style="width: 10%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
767 <div>6</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
768 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
769 <div class=graphicitem style="width: 10%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
770 <div>8</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
771 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
772 <div class=graphicitem style="width: 10%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
773 <div>10</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
774 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
775 <div class=graphicitem style="width: 10%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
776 <div>12</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
777 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
778 <div class=graphicitem style="width: 10%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
779 <div>14</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
780 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
781 <div class=graphicitem style="width: 10%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
782 <div>16</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
783 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
784 <div class=graphicitem style="width: 10%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
785 <div>18</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
786 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
787 <div class=graphicitem style="width: 10%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
788 <div>20</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
789 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
790 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
791 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
792 <div style="clear: left"></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
793 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
794
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
795 <a class=matchresult
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
796 href="#hit3-1"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
797 onmouseover='document.getElementById("defline3").innerHTML="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"'
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
798 onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
799 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
800 <div class="matchrow graphicrow">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
801 <div class="matchitem graphicitem"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
802 style="background-color: black; width: 100%"></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
803 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
804 </a>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
805
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
806 <a class=matchresult
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
807 href="#hit3-2"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
808 onmouseover='document.getElementById("defline3").innerHTML="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"'
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
809 onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
810 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
811 <div class="matchrow graphicrow">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
812 <div class="matchitem graphicitem"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
813 style="background-color: black; width: 100%"></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
814 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
815 </a>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
816
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
817 <a class=matchresult
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
818 href="#hit3-3"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
819 onmouseover='document.getElementById("defline3").innerHTML="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3\u0027UTR/plant_junction_region.|-9105899556052450000"'
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
820 onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
821 title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
822 <div class="matchrow graphicrow">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
823 <div class="matchitem graphicitem"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
824 style="background-color: transparent; width: 15%"></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
825 <div class="matchitem graphicitem"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
826 style="background-color: black; width: 85%"></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
827 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
828 </a>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
829
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
830 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
831 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
832 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
833 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
834
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
835
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
836
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
837 <section class=descriptions>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
838 <h3>Descriptions</h3>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
839
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
840 <div class=grey><div class=white>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
841 <h5 class=darkHeader>Sequences producing significant alignments:</h5>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
842
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
843 <table class=descriptiontable>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
844 <col/><col/><col/><col/><col/><col/><col/>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
845 <tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
846 <th>Description</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
847 <th>Max score</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
848 <th>Total score</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
849 <th>Query cover</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
850 <th>E value</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
851 <th>Ident</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
852 <th>Accession</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
853 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
854 <tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
855 <td><div><a href="#hit3-1"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
856 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
857 id="description3-1">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
858 AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
859 </a></div></td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
860 <td>40.1</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
861 <td>40.1</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
862 <td>100%</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
863 <td>1.513e-07</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
864 <td>100%</td>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
865 <td><a target="_top" href="http://example.com/example-genebank/AB209952.1/">5</a></td>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
866 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
867 <tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
868 <td><div><a href="#hit3-2"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
869 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
870 id="description3-2">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
871 DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
872 </a></div></td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
873 <td>40.1</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
874 <td>40.1</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
875 <td>100%</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
876 <td>1.513e-07</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
877 <td>100%</td>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
878 <td><a target="_top" href="http://example.com/example-genebank/DJ437711/">2</a></td>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
879 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
880 <tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
881 <td><div><a href="#hit3-3"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
882 title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
883 id="description3-3">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
884 AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
885 </a></div></td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
886 <td>34.2</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
887 <td>34.2</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
888 <td>85%</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
889 <td>9.334e-06</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
890 <td>100%</td>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
891 <td><a target="_top" href="http://example.com/example-genebank/AJ308515.1/">1</a></td>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
892 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
893 </table>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
894
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
895 </div></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
896 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
897
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
898
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
899
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
900 <section class=alignments>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
901 <h3>Alignments</h3>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
902
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
903 <div class=grey><div class=white>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
904 <div class=alignment id=hit3-1>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
905
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
906 <div class=linkheader>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
907 <div class=right><a href="#description3-1">Descriptions</a></div>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
908 <a class="linkheader" target="_top" href="http://example.com/example-genebank/AB209952.1/">Example Gene Bank</a>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
909 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
910
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
911 <div class=title>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
912 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
913 <p class=titleinfo>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
914 <span class=b>Sequence ID:</span> <a target="_top" href="http://example.com/example-genebank/AB209952.1/">gnl|BL_ORD_ID|5</a>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
915 <span class=b>Length:</span> 2457
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
916 <span class=b>Number of Matches:</span> 1
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
917 </p>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
918 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
919
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
920
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
921 <div class=hotspot id=hotspot3-1-1>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
922 <p class=range>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
923 <span class=range>Range 1: 2143 to 2162</span>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
924 </p>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
925
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
926 <table class=hotspotstable>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
927 <tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
928 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
929 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
930 <tr>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
931 <td>40.14 bits (20)</td>
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
932 <td>1.51296e-07</td>
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
933 <td>20/20 (100%)</td>
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
934 <td>0/20 (0%)</td>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
935 <td>Plus/Plus</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
936 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
937 </table>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
938
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
939 <pre class=alignmentgraphic>Query 1 CGCGCGCGGTGTCATCTATG 20
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
940 ||||||||||||||||||||
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
941 Subject 2143 CGCGCGCGGTGTCATCTATG 2162</pre>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
942 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
943
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
944 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
945
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
946 <div class=alignment id=hit3-2>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
947
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
948 <div class=linkheader>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
949 <div class=right><a href="#description3-2">Descriptions</a></div>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
950 <a class="linkheader" target="_top" href="http://example.com/example-genebank/DJ437711/">Example Gene Bank</a>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
951 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
952
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
953 <div class=title>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
954 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
955 <p class=titleinfo>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
956 <span class=b>Sequence ID:</span> <a target="_top" href="http://example.com/example-genebank/DJ437711/">gnl|BL_ORD_ID|2</a>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
957 <span class=b>Length:</span> 323
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
958 <span class=b>Number of Matches:</span> 1
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
959 </p>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
960 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
961
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
962
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
963 <div class=hotspot id=hotspot3-2-1>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
964 <p class=range>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
965 <span class=range>Range 1: 224 to 243</span>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
966 </p>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
967
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
968 <table class=hotspotstable>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
969 <tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
970 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
971 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
972 <tr>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
973 <td>40.14 bits (20)</td>
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
974 <td>1.51296e-07</td>
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
975 <td>20/20 (100%)</td>
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
976 <td>0/20 (0%)</td>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
977 <td>Plus/Plus</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
978 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
979 </table>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
980
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
981 <pre class=alignmentgraphic>Query 1 CGCGCGCGGTGTCATCTATG 20
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
982 ||||||||||||||||||||
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
983 Subject 224 CGCGCGCGGTGTCATCTATG 243</pre>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
984 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
985
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
986 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
987
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
988 <div class=alignment id=hit3-3>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
989
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
990 <div class=linkheader>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
991 <div class=right><a href="#description3-3">Descriptions</a></div>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
992 <a class="linkheader" target="_top" href="http://example.com/example-genebank/AJ308515.1/">Example Gene Bank</a>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
993 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
994
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
995 <div class=title>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
996 <p class=hittitle>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000</p>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
997 <p class=titleinfo>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
998 <span class=b>Sequence ID:</span> <a target="_top" href="http://example.com/example-genebank/AJ308515.1/">gnl|BL_ORD_ID|1</a>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
999 <span class=b>Length:</span> 1045
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1000 <span class=b>Number of Matches:</span> 1
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1001 </p>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1002 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1003
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1004
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1005 <div class=hotspot id=hotspot3-3-1>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1006 <p class=range>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1007 <span class=range>Range 1: 2 to 18</span>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1008 </p>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1009
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1010 <table class=hotspotstable>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1011 <tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1012 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1013 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1014 <tr>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1015 <td>34.1929 bits (17)</td>
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1016 <td>9.33411e-06</td>
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1017 <td>17/17 (100%)</td>
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1018 <td>0/17 (0%)</td>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1019 <td>Plus/Plus</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1020 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1021 </table>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1022
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1023 <pre class=alignmentgraphic>Query 4 GCGCGGTGTCATCTATG 20
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1024 |||||||||||||||||
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1025 Subject 2 GCGCGGTGTCATCTATG 18</pre>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1026 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1027
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1028 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1029
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1030 </div></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1031 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1032 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1033
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1034 <section class=match id=match4>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1035
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1036 <h2>Nucleotide Sequence (24 letters)</h2>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1037
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1038 <section class=header>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1039
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1040 <table class=headerdata>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1041 <tr><td class=param>Query number:</td><td>4</td></tr>
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1042 <tr><td class=param>Query ID:</td><td>Query_4</td></tr>
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1043 <tr><td class=param>Definition line:</td><td>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</td></tr>
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1044 <tr><td class=param>Length:</td><td>24</td></tr>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1045 </table>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1046
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1047 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1048
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1049 <section>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1050 <h3>No Hits</h3>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1051 <div class=grey>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1052 <table class=headerdata>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1053 <tr><td class=param>Message:</td><td>No hits found</td></tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1054 </table>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1055 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1056 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1057 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1058
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1059 <section class=match id=match5>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1060
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1061 <h2>Nucleotide Sequence (20 letters)</h2>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1062
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1063 <section class=header>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1064
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1065 <table class=headerdata>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1066 <tr><td class=param>Query number:</td><td>5</td></tr>
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1067 <tr><td class=param>Query ID:</td><td>Query_5</td></tr>
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1068 <tr><td class=param>Definition line:</td><td>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</td></tr>
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1069 <tr><td class=param>Length:</td><td>20</td></tr>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1070 </table>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1071
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1072 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1073
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1074 <section>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1075 <h3>No Hits</h3>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1076 <div class=grey>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1077 <table class=headerdata>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1078 <tr><td class=param>Message:</td><td>No hits found</td></tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1079 </table>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1080 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1081 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1082 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1083
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1084 <section class=match id=match6>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1085
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1086 <h2>Nucleotide Sequence (25 letters)</h2>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1087
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1088 <section class=header>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1089
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1090 <table class=headerdata>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1091 <tr><td class=param>Query number:</td><td>6</td></tr>
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1092 <tr><td class=param>Query ID:</td><td>Query_6</td></tr>
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1093 <tr><td class=param>Definition line:</td><td>Probe|QL-ELE-Bt-F1(mod)/Bt-R</td></tr>
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1094 <tr><td class=param>Length:</td><td>25</td></tr>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1095 </table>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1096
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1097 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1098
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1099
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1100 <section class=graphics>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1101 <h3>Graphic Summary</h3>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1102
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1103 <div class=grey>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1104 <h4 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h4>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1105
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1106 <div class=defline id=defline6>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1107 Mouse-over to show defline and scores, click to show alignments
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1108 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1109
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1110 <div class=graphic>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1111 <h5 class=darkHeader>Color key for alignment scores</h5>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1112 <div class=legend><div class=graphicrow>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1113 <div class=graphicitem style="background-color: black">&lt;40</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1114 <div class=graphicitem style="background-color: blue">40–50</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1115 <div class=graphicitem style="background-color: green">50–80</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1116 <div class=graphicitem style="background-color: magenta">80–200</div>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1117 <div class=graphicitem style="background-color: red">≥200</div>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1118 </div></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1119 <div style="clear: left"></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1120
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1121 <div class=tablewrapper>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1122
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1123 <div class=scale>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1124 <div>query:</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1125 <div class=graphicrow>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1126 <div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1127 <div class=graphicitem style="width: 12%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1128 <div>3</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1129 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1130 <div class=graphicitem style="width: 12%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1131 <div>6</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1132 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1133 <div class=graphicitem style="width: 12%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1134 <div>9</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1135 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1136 <div class=graphicitem style="width: 12%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1137 <div>12</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1138 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1139 <div class=graphicitem style="width: 12%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1140 <div>15</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1141 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1142 <div class=graphicitem style="width: 12%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1143 <div>18</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1144 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1145 <div class=graphicitem style="width: 12%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1146 <div>21</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1147 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1148 <div class=graphicitem style="width: 12%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1149 <div>24</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1150 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1151 <div class=graphicitem style="width: 4%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1152 <div>25</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1153 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1154 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1155 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1156 <div style="clear: left"></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1157 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1158
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1159 <a class=matchresult
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1160 href="#hit6-1"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1161 onmouseover='document.getElementById("defline6").innerHTML="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"'
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1162 onmouseout='document.getElementById("defline6").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1163 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1164 <div class="matchrow graphicrow">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1165 <div class="matchitem graphicitem"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1166 style="background-color: black; width: 88%"></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1167 <div class="matchitem graphicitem"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1168 style="background-color: transparent; width: 12%"></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1169 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1170 </a>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1171
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1172 <a class=matchresult
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1173 href="#hit6-2"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1174 onmouseover='document.getElementById("defline6").innerHTML="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"'
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1175 onmouseout='document.getElementById("defline6").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1176 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1177 <div class="matchrow graphicrow">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1178 <div class="matchitem graphicitem"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1179 style="background-color: black; width: 88%"></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1180 <div class="matchitem graphicitem"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1181 style="background-color: transparent; width: 12%"></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1182 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1183 </a>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1184
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1185 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1186 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1187 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1188 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1189
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1190
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1191
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1192 <section class=descriptions>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1193 <h3>Descriptions</h3>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1194
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1195 <div class=grey><div class=white>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1196 <h5 class=darkHeader>Sequences producing significant alignments:</h5>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1197
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1198 <table class=descriptiontable>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1199 <col/><col/><col/><col/><col/><col/><col/>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1200 <tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1201 <th>Description</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1202 <th>Max score</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1203 <th>Total score</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1204 <th>Query cover</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1205 <th>E value</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1206 <th>Ident</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1207 <th>Accession</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1208 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1209 <tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1210 <td><div><a href="#hit6-1"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1211 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1212 id="description6-1">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1213 EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1214 </a></div></td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1215 <td>36.2</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1216 <td>36.2</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1217 <td>88%</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1218 <td>3.148e-06</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1219 <td>95%</td>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1220 <td><a target="_top" href="http://example.com/example-genebank/EUG/">7</a></td>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1221 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1222 <tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1223 <td><div><a href="#hit6-2"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1224 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1225 id="description6-2">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1226 AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1227 </a></div></td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1228 <td>36.2</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1229 <td>36.2</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1230 <td>88%</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1231 <td>3.148e-06</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1232 <td>95%</td>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1233 <td><a target="_top" href="http://example.com/example-genebank/AY326434/">6</a></td>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1234 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1235 </table>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1236
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1237 </div></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1238 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1239
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1240
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1241
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1242 <section class=alignments>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1243 <h3>Alignments</h3>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1244
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1245 <div class=grey><div class=white>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1246 <div class=alignment id=hit6-1>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1247
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1248 <div class=linkheader>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1249 <div class=right><a href="#description6-1">Descriptions</a></div>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1250 <a class="linkheader" target="_top" href="http://example.com/example-genebank/EUG/">Example Gene Bank</a>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1251 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1252
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1253 <div class=title>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1254 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1255 <p class=titleinfo>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1256 <span class=b>Sequence ID:</span> <a target="_top" href="http://example.com/example-genebank/EUG/">gnl|BL_ORD_ID|7</a>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1257 <span class=b>Length:</span> 4983
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1258 <span class=b>Number of Matches:</span> 1
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1259 </p>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1260 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1261
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1262
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1263 <div class=hotspot id=hotspot6-1-1>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1264 <p class=range>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1265 <span class=range>Range 1: 2344 to 2365</span>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1266 </p>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1267
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1268 <table class=hotspotstable>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1269 <tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1270 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1271 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1272 <tr>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1273 <td>36.1753 bits (18)</td>
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1274 <td>3.14801e-06</td>
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1275 <td>21/22 (95%)</td>
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1276 <td>0/22 (0%)</td>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1277 <td>Plus/Plus</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1278 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1279 </table>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1280
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1281 <pre class=alignmentgraphic>Query 1 ACATGAACAGCGCCTTGACCAC 22
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1282 |||||||||||||| |||||||
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1283 Subject 2344 ACATGAACAGCGCCCTGACCAC 2365</pre>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1284 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1285
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1286 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1287
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1288 <div class=alignment id=hit6-2>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1289
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1290 <div class=linkheader>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1291 <div class=right><a href="#description6-2">Descriptions</a></div>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1292 <a class="linkheader" target="_top" href="http://example.com/example-genebank/AY326434/">Example Gene Bank</a>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1293 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1294
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1295 <div class=title>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1296 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1297 <p class=titleinfo>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1298 <span class=b>Sequence ID:</span> <a target="_top" href="http://example.com/example-genebank/AY326434/">gnl|BL_ORD_ID|6</a>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1299 <span class=b>Length:</span> 4180
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1300 <span class=b>Number of Matches:</span> 1
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1301 </p>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1302 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1303
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1304
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1305 <div class=hotspot id=hotspot6-2-1>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1306 <p class=range>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1307 <span class=range>Range 1: 1541 to 1562</span>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1308 </p>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1309
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1310 <table class=hotspotstable>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1311 <tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1312 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1313 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1314 <tr>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1315 <td>36.1753 bits (18)</td>
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1316 <td>3.14801e-06</td>
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1317 <td>21/22 (95%)</td>
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1318 <td>0/22 (0%)</td>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1319 <td>Plus/Plus</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1320 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1321 </table>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1322
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1323 <pre class=alignmentgraphic>Query 1 ACATGAACAGCGCCTTGACCAC 22
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1324 |||||||||||||| |||||||
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1325 Subject 1541 ACATGAACAGCGCCCTGACCAC 1562</pre>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1326 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1327
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1328 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1329
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1330 </div></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1331 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1332 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1333
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1334 <section class=match id=match7>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1335
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1336 <h2>Nucleotide Sequence (74 letters)</h2>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1337
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1338 <section class=header>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1339
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1340 <table class=headerdata>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1341 <tr><td class=param>Query number:</td><td>7</td></tr>
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1342 <tr><td class=param>Query ID:</td><td>Query_7</td></tr>
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1343 <tr><td class=param>Definition line:</td><td>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</td></tr>
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1344 <tr><td class=param>Length:</td><td>74</td></tr>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1345 </table>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1346
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1347 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1348
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1349
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1350 <section class=graphics>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1351 <h3>Graphic Summary</h3>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1352
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1353 <div class=grey>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1354 <h4 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h4>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1355
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1356 <div class=defline id=defline7>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1357 Mouse-over to show defline and scores, click to show alignments
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1358 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1359
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1360 <div class=graphic>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1361 <h5 class=darkHeader>Color key for alignment scores</h5>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1362 <div class=legend><div class=graphicrow>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1363 <div class=graphicitem style="background-color: black">&lt;40</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1364 <div class=graphicitem style="background-color: blue">40–50</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1365 <div class=graphicitem style="background-color: green">50–80</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1366 <div class=graphicitem style="background-color: magenta">80–200</div>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1367 <div class=graphicitem style="background-color: red">≥200</div>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1368 </div></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1369 <div style="clear: left"></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1370
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1371 <div class=tablewrapper>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1372
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1373 <div class=scale>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1374 <div>query:</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1375 <div class=graphicrow>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1376 <div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1377 <div class=graphicitem style="width: 10.8108108108%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1378 <div>8</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1379 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1380 <div class=graphicitem style="width: 10.8108108108%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1381 <div>16</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1382 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1383 <div class=graphicitem style="width: 10.8108108108%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1384 <div>24</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1385 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1386 <div class=graphicitem style="width: 10.8108108108%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1387 <div>32</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1388 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1389 <div class=graphicitem style="width: 10.8108108108%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1390 <div>40</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1391 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1392 <div class=graphicitem style="width: 10.8108108108%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1393 <div>48</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1394 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1395 <div class=graphicitem style="width: 10.8108108108%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1396 <div>56</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1397 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1398 <div class=graphicitem style="width: 10.8108108108%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1399 <div>64</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1400 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1401 <div class=graphicitem style="width: 10.8108108108%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1402 <div>72</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1403 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1404 <div class=graphicitem style="width: 2.7027027027%">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1405 <div>&nbsp;</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1406 <div class=lastlabel>74</div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1407 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1408 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1409 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1410 <div style="clear: left"></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1411 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1412
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1413 <a class=matchresult
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1414 href="#hit7-1"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1415 onmouseover='document.getElementById("defline7").innerHTML="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"'
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1416 onmouseout='document.getElementById("defline7").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1417 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1418 <div class="matchrow graphicrow">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1419 <div class="matchitem graphicitem"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1420 style="background-color: green; width: 100%"></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1421 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1422 </a>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1423
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1424 <a class=matchresult
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1425 href="#hit7-2"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1426 onmouseover='document.getElementById("defline7").innerHTML="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"'
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1427 onmouseout='document.getElementById("defline7").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1428 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1429 <div class="matchrow graphicrow">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1430 <div class="matchitem graphicitem"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1431 style="background-color: green; width: 100%"></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1432 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1433 </a>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1434
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1435 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1436 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1437 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1438 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1439
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1440
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1441
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1442 <section class=descriptions>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1443 <h3>Descriptions</h3>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1444
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1445 <div class=grey><div class=white>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1446 <h5 class=darkHeader>Sequences producing significant alignments:</h5>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1447
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1448 <table class=descriptiontable>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1449 <col/><col/><col/><col/><col/><col/><col/>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1450 <tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1451 <th>Description</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1452 <th>Max score</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1453 <th>Total score</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1454 <th>Query cover</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1455 <th>E value</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1456 <th>Ident</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1457 <th>Accession</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1458 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1459 <tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1460 <td><div><a href="#hit7-1"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1461 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1462 id="description7-1">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1463 EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1464 </a></div></td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1465 <td>67.9</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1466 <td>67.9</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1467 <td>100%</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1468 <td>3.564e-15</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1469 <td>86%</td>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1470 <td><a target="_top" href="http://example.com/example-genebank/EUG/">7</a></td>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1471 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1472 <tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1473 <td><div><a href="#hit7-2"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1474 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1475 id="description7-2">
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1476 AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1477 </a></div></td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1478 <td>67.9</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1479 <td>67.9</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1480 <td>100%</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1481 <td>3.564e-15</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1482 <td>86%</td>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1483 <td><a target="_top" href="http://example.com/example-genebank/AY326434/">6</a></td>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1484 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1485 </table>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1486
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1487 </div></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1488 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1489
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1490
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1491
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1492 <section class=alignments>
114
4f0ed3b5ae46 update test results
Jan Kanis <jan.code@jankanis.nl>
parents: 106
diff changeset
1493 <h3>Alignments</h3>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1494
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1495 <div class=grey><div class=white>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1496 <div class=alignment id=hit7-1>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1497
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1498 <div class=linkheader>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1499 <div class=right><a href="#description7-1">Descriptions</a></div>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1500 <a class="linkheader" target="_top" href="http://example.com/example-genebank/EUG/">Example Gene Bank</a>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1501 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1502
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1503 <div class=title>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1504 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1505 <p class=titleinfo>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1506 <span class=b>Sequence ID:</span> <a target="_top" href="http://example.com/example-genebank/EUG/">gnl|BL_ORD_ID|7</a>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1507 <span class=b>Length:</span> 4983
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1508 <span class=b>Number of Matches:</span> 1
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1509 </p>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1510 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1511
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1512
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1513 <div class=hotspot id=hotspot7-1-1>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1514 <p class=range>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1515 <span class=range>Range 1: 2319 to 2392</span>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1516 </p>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1517
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1518 <table class=hotspotstable>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1519 <tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1520 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1521 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1522 <tr>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1523 <td>67.8929 bits (34)</td>
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1524 <td>3.56369e-15</td>
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1525 <td>64/74 (86%)</td>
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1526 <td>0/74 (0%)</td>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1527 <td>Plus/Plus</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1528 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1529 </table>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1530
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1531 <pre class=alignmentgraphic>Query 1 GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTG 60
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1532 ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| |
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1533 Subject 2319 GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTC 2378</pre>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1534 <pre class=alignmentgraphic>Query 61 TTCGCAGTCCAGAA 74
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1535 ||||| ||||||||
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1536 Subject 2379 TTCGCCGTCCAGAA 2392</pre>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1537 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1538
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1539 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1540
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1541 <div class=alignment id=hit7-2>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1542
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1543 <div class=linkheader>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1544 <div class=right><a href="#description7-2">Descriptions</a></div>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1545 <a class="linkheader" target="_top" href="http://example.com/example-genebank/AY326434/">Example Gene Bank</a>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1546 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1547
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1548 <div class=title>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1549 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1550 <p class=titleinfo>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1551 <span class=b>Sequence ID:</span> <a target="_top" href="http://example.com/example-genebank/AY326434/">gnl|BL_ORD_ID|6</a>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1552 <span class=b>Length:</span> 4180
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1553 <span class=b>Number of Matches:</span> 1
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1554 </p>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1555 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1556
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1557
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1558 <div class=hotspot id=hotspot7-2-1>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1559 <p class=range>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1560 <span class=range>Range 1: 1589 to 1516</span>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1561 </p>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1562
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1563 <table class=hotspotstable>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1564 <tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1565 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1566 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1567 <tr>
118
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1568 <td>67.8929 bits (34)</td>
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1569 <td>3.56369e-15</td>
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1570 <td>64/74 (86%)</td>
7f3f8c10f44b fix for Rikilt issues 8, 11, 12, 14
Jan Kanis <jan.code@jankanis.nl>
parents: 115
diff changeset
1571 <td>0/74 (0%)</td>
106
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1572 <td>Plus/Minus</td>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1573 </tr>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1574 </table>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1575
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1576 <pre class=alignmentgraphic>Query 1 GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTG 60
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1577 ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| |
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1578 Subject 1589 GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTC 1530</pre>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1579 <pre class=alignmentgraphic>Query 61 TTCGCAGTCCAGAA 74
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1580 ||||| ||||||||
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1581 Subject 1529 TTCGCCGTCCAGAA 1516</pre>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1582 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1583
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1584 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1585
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1586 </div></div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1587 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1588 </section>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1589
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1590 </div>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1591
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1592 <footer>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1593 This page was generated by <a href="https://github.com/thehyve/blast2html/">blast2html</a>.
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1594 </footer>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1595 </body>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1596 </html>
ed71448ee154 add new test files
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1597