Mercurial > repos > jfb > kinamine_y_for_peptide_shaker

changeset 8:0438f8825718 draft

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Uploaded
author jfb
date Tue, 17 Sep 2019 16:18:22 -0400
parents 5b4bd0d94cdd
children 59617fffe56a
files KM Y PS/JavaApplication4.jar KM Y PS/Kinamine_PS.xml
diffstat 2 files changed, 2 insertions(+), 0 deletions(-) [+]
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Binary file KM Y PS/JavaApplication4.jar has changed
--- a/KM Y PS/Kinamine_PS.xml	Tue Sep 17 14:46:37 2019 -0400
+++ b/KM Y PS/Kinamine_PS.xml	Tue Sep 17 16:18:22 2019 -0400
@@ -34,6 +34,8 @@
 Additionally, all discovered peptides are assumed to have come from a protein.  For every phospho(Y) peptide, KinaMine takes the associated protein accession number, searches the FASTA file for that accession number and returns the amino acid percent composition of the protein(s) which that peptide came from.  This file is the *Substrate Background Frequency* file
 This tool is intended to be used in conjunction with Negative Motif Finder and Kinatest, the three together creating a GalaxyP version of the KINATEST-ID workbook.
 
+java -Djava.awt.headless=true -jar JavaApplication4.jar psm.tabular reference.fasta outputs 0.5 output
+
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