Mercurial > repos > jjohnson > gmap
changeset 1:30d42bb409b8
GMAP - add tool-data/gmap_indices.loc.sample
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Tue, 18 Oct 2011 11:51:15 -0500 |
| parents | d58d272914e7 |
| children | 52da588232b0 |
| files | tool-data/gmap_indices.loc.sample |
| diffstat | 1 files changed, 10 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/gmap_indices.loc.sample Tue Oct 18 11:51:15 2011 -0500 @@ -0,0 +1,10 @@ +#This is a sample file distributed with Galaxy that enables tools +#to use a directory of GMAPDB indexed sequences data files. You will need +#to create these data files using gmap_build and then create a gmap_indices.loc file +#similar to this one (store it in this directory) that points to +#the directories in which those files are stored. The gmap_indices.loc +#file has this format (white space characters are TAB characters): +# +#<unique_build_id> <dbkey> <display_name> <kmers> <map,map> <snp,snp> <file_base_path> +#hg18 hg18 hg18 (cmet atoi) 12,13,14,15 splicesites,introns snps /depot/data2/galaxy/gmap/hg18 +#hg19 hg19 hg19 (cmet atoi) 12,13,14,15 splicesites,introns,snps snps,dbsnp /depot/data2/galaxy/gmap/hg19