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"planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/netmhc commit 3bf9a39fe11622806ac6b032ba4fc6139a003580"
author jjohnson
date Tue, 18 Feb 2020 14:48:51 -0500
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bb25a4e5f211 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/netmhc commit 3bf9a39fe11622806ac6b032ba4fc6139a003580"
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1 NetMHC 4.0 server predicts binding of peptides to a number of different HLA alleles using artificial neural networks (ANNs).
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bb25a4e5f211 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/netmhc commit 3bf9a39fe11622806ac6b032ba4fc6139a003580"
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3 SEE: http://www.cbs.dtu.dk/services/NetMHC/
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5 NetMHC is available to academic researchers.
bb25a4e5f211 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/netmhc commit 3bf9a39fe11622806ac6b032ba4fc6139a003580"
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6 The download webpage requires the user to accept a academic license aggrement, which prevents automatic Galaxy package installation.
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7 http://www.cbs.dtu.dk/cgi-bin/nph-sw_request?netMHC
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bb25a4e5f211 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/netmhc commit 3bf9a39fe11622806ac6b032ba4fc6139a003580"
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10 Download NetMHC 4.0 and install as described in: netMHC-4.0.readme
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11 ( Be sure to do step 3 which installs the data from: http://www.cbs.dtu.dk/services/NetMHC-4.0/data.tar.gz )
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14 For Galaxy installation :
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16 Add tool_depedencies/netMHC/4.0/env.sh
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18 The env.sh must define ENVIROMENT variables: NMHOME and TMPDIR
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20 For example, if you installed netMHC at: /home/galaxy/src/netMHC-4.0
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22 galaxy@galaxy [/home/galaxy] % cat tool_dependencies/netMHC/4.0/env.sh
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23 export NMHOME=/home/galaxy/src/netMHC-4.0
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24 export TMPDIR=/tmp
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25 export PATH=/home/galaxy/src/netMHC-4.0:$PATH
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