Mercurial > repos > john-mccallum > ssr_marker_design

diff MISA/design_MISA.xml @ 0:3006582bfc76

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded V1.0 MISA tools and helper scripts
author john-mccallum
date Wed, 14 Sep 2011 23:57:57 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/MISA/design_MISA.xml	Wed Sep 14 23:57:57 2011 -0400
@@ -0,0 +1,27 @@
+<tool id="design_MISA_1" name="MISA Primer Design">
+  <description>Design primer sets using MISA output </description>
+  <command interpreter="bash">design_MISA.sh  $inputMisaFile $inputFastaFile $outputfile</command>
+  <inputs>
+    <param format="misa" name="inputMisaFile" type="data" label="Misa Source file"/>
+    <param format="fasta" name="inputFastaFile" type="data" label="Fasta Source file"/>
+  </inputs>
+  <outputs>
+     <data format="tabular"  name="outputfile" />
+  </outputs>
+<help>
+
+.. class:: infomark
+
+Design SSR primer sets from MISA output using Primer3
+
+This tool uses helper scripts developed at IPK
+
+http://pgrc.ipk-gatersleben.de/misa/primer3.html
+
+
+
+
+</help>
+
+
+</tool>