Mercurial > repos > konradpaszkiewicz > oasesoptimiser
comparison README @ 0:53e887dda799 default tip
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author | konradpaszkiewicz |
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date | Tue, 07 Jun 2011 17:41:37 -0400 |
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1 #Created 07/01/2011 | |
2 #Konrad Paszkiewicz, Exeter Sequencing Service, University of Exeter | |
3 | |
4 Oases optimiser | |
5 | |
6 This Galaxy tool is intended to provide a crude but effective method of producing semi-optimised transcriptome assemblies. It operates by performing a number of user defined Velvet assemblies upon which Oases is then run. The results of all of these runs are then put through a final Oases step where they act as scaffolds for the main assembly. | |
7 | |
8 Prerequisites: | |
9 | |
10 1. Enclosed scripts | |
11 2. Working installation of Velvet and Oases | |
12 | |
13 Limitations: | |
14 | |
15 This is a crude optimisation step which DOES NOT try to evaluate the quality of each assembly or map to any reference cDNA. |