view GEMBASSY-1.0.3/acd/gseq2png.acd @ 0:8300eb051bea draft

Initial upload

application: gseq2png [
  documentation: "Converts a sequence to PNG image"
  groups: "Display"
  embassy: "gembassy"
  relations: "EDAM_topic:0092 Data visualisation"
  relations: "EDAM_topic:0157 Sequence composition analysis"
  relations: "EDAM_operation:0377 Sequence composition calculation
              (nucleic acid)"
]

section: input [
  information: "Input section"
  type: "page"
]

  seqall: sequence [
    parameter: "Y"
    type: "nucleotide"
    features: "Y"
    relations: "EDAM_data:0849 Sequence record"
  ]

  string: format [
    information: "Output file format. Dependent on 'convert' command"
    knowntype: "output format"
    default: "png"
  ]

endsection: input

section: advanced [
  information: "Advanced section"
  type: "page"
]

  integer: width [
    information: "Width of the image"
    default: "640"
  ]

  integer: window [
    information: "Window size of a sequence to represent each pixel"
    default: "20"
  ]

endsection: advanced

section: output [
  information: "Output section"
  type: "page"
]

  string: goutfile [
    information: "Output file for non interactive displays"
    knowntype: "output filename"
    relations: "EDAM_data:2166 Sequence composition plot"
    default: "gseq2png"
  ]

endsection: output