annotate tools/myTools/13_translate_perts.xml @ 1:7e5c71b2e71f draft default tip

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<tool id="netisce13" name="Netisce Step 13" version="0.1.0" R_template_version="3.6.3">
<description>Translates combinations of perturbations on FVS control nodes into readable format.</description>

    <requirements>
        <requirement type="package" version="1.0.7">dplyr</requirement>
        <requirement type="package" version="3.3.0">ggplot2</requirement>
    </requirements>
    
    <command> Rscript '$__tool_directory__/bin/pertanalysis.R' '$perts' successful_controlnode_perturbations.txt</command>

    <inputs>
        <param name="perts" type="data" format="txt" label="Successful Perturbations"/>
    </inputs>

    <outputs>
        <data name="output" format="txt" from_work_dir="successful_controlnode_perturbations.txt" label="FVS control node perturbations that passed both filtering criteria"/>
    </outputs>

    <tests>
        <test>
            <param name="perts" value="extract_perts.txt" />
            <output name="output" value="successful_controlnode_perturbations.txt" ftype="txt" />
        </test>
    </tests>

    <help>
    This tool translates combinations of perturbations on FVS control nodes into readable format
    Required Inputs:
    1. Successful Perturbations that shifted network from undesired to desired state
    </help>

</tool>