Mercurial > repos > laurenmarazzi > netisce_test
diff tools/myTools/13_translate_perts.xml @ 1:7e5c71b2e71f draft default tip
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author | laurenmarazzi |
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date | Wed, 22 Dec 2021 16:00:34 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/myTools/13_translate_perts.xml Wed Dec 22 16:00:34 2021 +0000 @@ -0,0 +1,32 @@ +<tool id="netisce13" name="Netisce Step 13" version="0.1.0" R_template_version="3.6.3"> +<description>Translates combinations of perturbations on FVS control nodes into readable format.</description> + + <requirements> + <requirement type="package" version="1.0.7">dplyr</requirement> + <requirement type="package" version="3.3.0">ggplot2</requirement> + </requirements> + + <command> Rscript '$__tool_directory__/bin/pertanalysis.R' '$perts' successful_controlnode_perturbations.txt</command> + + <inputs> + <param name="perts" type="data" format="txt" label="Successful Perturbations"/> + </inputs> + + <outputs> + <data name="output" format="txt" from_work_dir="successful_controlnode_perturbations.txt" label="FVS control node perturbations that passed both filtering criteria"/> + </outputs> + + <tests> + <test> + <param name="perts" value="extract_perts.txt" /> + <output name="output" value="successful_controlnode_perturbations.txt" ftype="txt" /> + </test> + </tests> + + <help> + This tool translates combinations of perturbations on FVS control nodes into readable format + Required Inputs: + 1. Successful Perturbations that shifted network from undesired to desired state + </help> + +</tool> \ No newline at end of file