Mercurial > repos > lecorguille > xcms_summary

comparison planemo_test.sh @ 7:ed8d80fc927c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 727b4a74b8e424af622dc0e2b0c910cdd020cd29
author lecorguille
date Mon, 25 Apr 2016 11:15:29 -0400
parents ca7c9a6da2c6
children
comparison
equal deleted inserted replaced
6:ca7c9a6da2c6 7:ed8d80fc927c
1 planemo conda_init 1 # Example of planemo command to launch test
2 planemo conda_install .
3 #Linking packages ...
4 #Error: ERROR: placeholder '/root/miniconda3/envs/_build_placehold_placehold_placehold_placehold_placehold_p' too short in: ncurses-5.9-4
5 2
6 3
7 4
5 # -- Use of installed package environments
6 # after having installing package on a local galaxy instance
8 source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh 7 source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh
9 source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-camera/1.22.0/lecorguille/package_bioconductor_camera_1_22_0/22cec61d66c2/env.sh 8 source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-camera/1.22.0/lecorguille/package_bioconductor_camera_1_22_0/22cec61d66c2/env.sh
10 planemo test --install_galaxy 9 planemo test --install_galaxy
11 10
12 #All 1 test(s) executed passed. 11 #All 1 test(s) executed passed.
13 #abims_xcms_summary[0]: passed 12 #abims_xcms_summary[0]: passed
14 13
15 14
16 planemo shed_test --install_galaxy --galaxy_branch "dev" 15 # -- Use of conda dependencies
16 planemo conda_init --conda_prefix /tmp/mc
17 planemo conda_install --conda_prefix /tmp/mc .
18 planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution
17 19
18 #All 2 test(s) executed passed. 20 #All 1 test(s) executed passed.
19 #testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_xcmsset/abims_xcms_xcmsSet/2.0.8[0]: passed 21 #abims_xcms_summary[0]: passed
20 #testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_xcmsset/abims_xcms_xcmsSet/2.0.8[1]: passed
21 22
23
24 # -- Use of shed_test
25 planemo shed_test --install_galaxy
26
27 #All 1 test(s) executed passed.
28 #toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_summary/abims_xcms_summary/1.0.0[0]: passed
29
30