diff planemo_test.sh @ 7:ed8d80fc927c draft

planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 727b4a74b8e424af622dc0e2b0c910cdd020cd29

--- a/planemo_test.sh	Fri Apr 08 10:40:12 2016 -0400
+++ b/planemo_test.sh	Mon Apr 25 11:15:29 2016 -0400
@@ -1,10 +1,9 @@
-planemo conda_init
-planemo conda_install .
-#Linking packages ...
-#Error: ERROR: placeholder '/root/miniconda3/envs/_build_placehold_placehold_placehold_placehold_placehold_p' too short in: ncurses-5.9-4
+# Example of planemo command to launch test
 
 
 
+# -- Use of installed package environments
+# after having installing package on a local galaxy instance
 source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh
 source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-camera/1.22.0/lecorguille/package_bioconductor_camera_1_22_0/22cec61d66c2/env.sh
 planemo test --install_galaxy
@@ -13,9 +12,19 @@
 #abims_xcms_summary[0]: passed
 
 
-planemo shed_test --install_galaxy --galaxy_branch "dev" 
+# -- Use of conda dependencies
+planemo conda_init --conda_prefix /tmp/mc
+planemo conda_install --conda_prefix /tmp/mc . 
+planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution
+
+#All 1 test(s) executed passed.
+#abims_xcms_summary[0]: passed
 
-#All 2 test(s) executed passed.
-#testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_xcmsset/abims_xcms_xcmsSet/2.0.8[0]: passed
-#testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_xcmsset/abims_xcms_xcmsSet/2.0.8[1]: passed
+
+# -- Use of shed_test
+planemo shed_test --install_galaxy
 
+#All 1 test(s) executed passed.
+#toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_summary/abims_xcms_summary/1.0.0[0]: passed
+
+