comparison galaxy_stubs/FeatureSelector.xml @ 2:605370bc1def draft default tip

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author luis
date Tue, 12 Jul 2016 12:33:33 -0400
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1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
3 <!--Proposed Tool Section: [QuEasy (QSAR)]-->
4 <tool id="FeatureSelector" name="FeatureSelector" version="1.1.0">
5 <description>run feature-selection on a QSAR model</description>
6 <macros>
7 <token name="@EXECUTABLE@">FeatureSelector</token>
8 <import>macros.xml</import>
9 </macros>
10 <expand macro="stdio"/>
11 <expand macro="requirements"/>
12 <command>FeatureSelector
13
14 #if $param_i:
15 -i $param_i
16 #end if
17 #if $param_dat:
18 -dat $param_dat
19 #end if
20 #if $param_o:
21 -o $param_o
22 #end if
23 #if $param_type:
24 -type
25 #if " " in str($param_type):
26 "$param_type"
27 #else
28 $param_type
29 #end if
30 #end if
31 </command>
32 <inputs>
33 <param name="param_i" type="data" format="mod" optional="False" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="input mod-file" help="(-i) "/>
34 <param name="param_dat" type="data" format="dat" optional="False" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="data-file" help="(-dat) "/>
35 <param name="param_type" type="select" optional="False" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="feature-selection type" help="(-type) ">
36 <option value="remove_correlated">remove_correlated</option>
37 <option value=" forward_selection"> forward_selection</option>
38 <option value=" backward_selection"> backward_selection</option>
39 <option value=" stepwise_selection"> stepwise_selection</option>
40 <option value=" twinscan"> twinscan</option>
41 <option value=" removeLowResponseCorrelation"> removeLowResponseCorrelation</option>
42 </param>
43 </inputs>
44 <expand macro="advanced_options"/>
45 <outputs>
46 <data name="param_o" format="mod"/>
47 </outputs>
48 <help>FeatureSelector runs a feature-selection for a given QSAR model.
49
50 The type of feature-selection to be done is specified by '-type'. Input of this tool is a data file as generated by InputReader containing the training data for feature-selection and a QSAR model file as generated by ModelCreator (or this tool itself). Note that you can apply several feature-selection methods in succession by using the output of one call of this tool as input for the next call.
51 Model- and kernel-parameters (if any) will be automatically optimized by cross-validation after applying the desired feature-selection.
52
53 Output of this tool is a model-file that can be used by other QuEasy tools (e.g. Validator).
54
55 </help>
56 </tool>