view galaxy_stubs/FeatureSelector.xml @ 2:605370bc1def draft default tip

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<?xml version='1.0' encoding='UTF-8'?>
<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
<!--Proposed Tool Section: [QuEasy (QSAR)]-->
<tool id="FeatureSelector" name="FeatureSelector" version="1.1.0">
  <description>run feature-selection on a QSAR model</description>
  <macros>
    <token name="@EXECUTABLE@">FeatureSelector</token>
    <import>macros.xml</import>
  </macros>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>FeatureSelector

#if $param_i:
  -i $param_i
#end if
#if $param_dat:
  -dat $param_dat
#end if
#if $param_o:
  -o $param_o
#end if
#if $param_type:
  -type
  #if " " in str($param_type):
    "$param_type"
  #else
    $param_type
  #end if
#end if
</command>
  <inputs>
    <param name="param_i" type="data" format="mod" optional="False" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="input mod-file" help="(-i) "/>
    <param name="param_dat" type="data" format="dat" optional="False" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="data-file" help="(-dat) "/>
    <param name="param_type" type="select" optional="False" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="feature-selection type" help="(-type) ">
      <option value="remove_correlated">remove_correlated</option>
      <option value=" forward_selection"> forward_selection</option>
      <option value=" backward_selection"> backward_selection</option>
      <option value=" stepwise_selection"> stepwise_selection</option>
      <option value=" twinscan"> twinscan</option>
      <option value=" removeLowResponseCorrelation"> removeLowResponseCorrelation</option>
    </param>
  </inputs>
  <expand macro="advanced_options"/>
  <outputs>
    <data name="param_o" format="mod"/>
  </outputs>
  <help>FeatureSelector runs a feature-selection for a given QSAR model.

The type of feature-selection to be done is specified by '-type'. Input of this tool is a data file as generated by InputReader containing the training data for feature-selection and a QSAR model file as generated by ModelCreator (or this tool itself). Note that you can apply several feature-selection methods in succession by using the output of one call of this tool as input for the next call.
Model- and kernel-parameters (if any) will be automatically optimized by cross-validation after applying the desired feature-selection.

Output of this tool is a model-file that can be used by other QuEasy tools (e.g. Validator).

</help>
</tool>