diff galaxy_stubs/FeatureSelector.xml @ 2:605370bc1def draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/galaxy_stubs/FeatureSelector.xml	Tue Jul 12 12:33:33 2016 -0400
@@ -0,0 +1,56 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--Proposed Tool Section: [QuEasy (QSAR)]-->
+<tool id="FeatureSelector" name="FeatureSelector" version="1.1.0">
+  <description>run feature-selection on a QSAR model</description>
+  <macros>
+    <token name="@EXECUTABLE@">FeatureSelector</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>FeatureSelector
+
+#if $param_i:
+  -i $param_i
+#end if
+#if $param_dat:
+  -dat $param_dat
+#end if
+#if $param_o:
+  -o $param_o
+#end if
+#if $param_type:
+  -type
+  #if " " in str($param_type):
+    "$param_type"
+  #else
+    $param_type
+  #end if
+#end if
+</command>
+  <inputs>
+    <param name="param_i" type="data" format="mod" optional="False" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="input mod-file" help="(-i) "/>
+    <param name="param_dat" type="data" format="dat" optional="False" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="data-file" help="(-dat) "/>
+    <param name="param_type" type="select" optional="False" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="feature-selection type" help="(-type) ">
+      <option value="remove_correlated">remove_correlated</option>
+      <option value=" forward_selection"> forward_selection</option>
+      <option value=" backward_selection"> backward_selection</option>
+      <option value=" stepwise_selection"> stepwise_selection</option>
+      <option value=" twinscan"> twinscan</option>
+      <option value=" removeLowResponseCorrelation"> removeLowResponseCorrelation</option>
+    </param>
+  </inputs>
+  <expand macro="advanced_options"/>
+  <outputs>
+    <data name="param_o" format="mod"/>
+  </outputs>
+  <help>FeatureSelector runs a feature-selection for a given QSAR model.
+
+The type of feature-selection to be done is specified by '-type'. Input of this tool is a data file as generated by InputReader containing the training data for feature-selection and a QSAR model file as generated by ModelCreator (or this tool itself). Note that you can apply several feature-selection methods in succession by using the output of one call of this tool as input for the next call.
+Model- and kernel-parameters (if any) will be automatically optimized by cross-validation after applying the desired feature-selection.
+
+Output of this tool is a model-file that can be used by other QuEasy tools (e.g. Validator).
+
+</help>
+</tool>