Mercurial > repos > matt-shirley > ncbi_sra_toolkit

comparison sra_pileup.xml @ 28:fdc981664a43

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Update to most recent GitHub version passing tests.
author Matt Shirley <mdshw5@gmail.com>
date Wed, 01 Apr 2015 12:35:38 -0400
parents 393a04ec0fa9
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27:8be4f23d1018 28:fdc981664a43
40 <data format="pileup" name="output"/> 40 <data format="pileup" name="output"/>
41 </outputs> 41 </outputs>
42 <requirements> 42 <requirements>
43 <requirement type="package" version="2.4.5">sra_toolkit</requirement> 43 <requirement type="package" version="2.4.5">sra_toolkit</requirement>
44 </requirements> 44 </requirements>
45 <tests>
46 <test>
47 <param name="input_select" value="accession_number"/>
48 <param name="accession" value="SRR925743"/>
49 <param name="region" value="17:41243452-41277500"/>
50 <output name="output" file="sra_pileup_result.pileup" ftype="pileup" />
51 </test>
52 </tests>
45 <help> 53 <help>
46 This tool produces pileup format from sra archives using sra-pileup. 54 This tool extracts reads from sra archives using sam-dump.
47 Browse the NCBI SRA for SRR accessions at http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=studies. 55 Browse the NCBI SRA for SRR accessions at http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=studies.
48 The sra-pileup program is developed at NCBI, and is available at: http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software. 56 The sam-dump program is developed at NCBI, and is available at: http://github.com/ncbi/sra-tools
49 Contact Matt Shirley at mdshw5@gmail.com for support and bug reports. 57 Please submit inquiries and bug reports to http://github.com/mdshw5/sra-tools-galaxy.
50 </help> 58 </help>
51 </tool> 59 </tool>