Mercurial > repos > matt-shirley > ncbi_sra_toolkit
diff sra_pileup.xml @ 28:fdc981664a43
Update to most recent GitHub version passing tests.
author | Matt Shirley <mdshw5@gmail.com> |
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date | Wed, 01 Apr 2015 12:35:38 -0400 |
parents | 393a04ec0fa9 |
children |
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--- a/sra_pileup.xml Mon Mar 30 22:40:59 2015 -0400 +++ b/sra_pileup.xml Wed Apr 01 12:35:38 2015 -0400 @@ -42,10 +42,18 @@ <requirements> <requirement type="package" version="2.4.5">sra_toolkit</requirement> </requirements> + <tests> + <test> + <param name="input_select" value="accession_number"/> + <param name="accession" value="SRR925743"/> + <param name="region" value="17:41243452-41277500"/> + <output name="output" file="sra_pileup_result.pileup" ftype="pileup" /> + </test> + </tests> <help> - This tool produces pileup format from sra archives using sra-pileup. - Browse the NCBI SRA for SRR accessions at http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=studies. - The sra-pileup program is developed at NCBI, and is available at: http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software. - Contact Matt Shirley at mdshw5@gmail.com for support and bug reports. + This tool extracts reads from sra archives using sam-dump. + Browse the NCBI SRA for SRR accessions at http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=studies. + The sam-dump program is developed at NCBI, and is available at: http://github.com/ncbi/sra-tools + Please submit inquiries and bug reports to http://github.com/mdshw5/sra-tools-galaxy. </help> </tool>