Mercurial > repos > mcharles > rapsosnp
comparison rapsodyn/filtersam_mapped_and_unique.xml @ 7:3f7b0788a1c4 draft
Uploaded
author | mcharles |
---|---|
date | Tue, 07 Oct 2014 10:34:34 -0400 |
parents | 442a7c88b886 |
children | 0a6c1cfe4dc8 |
comparison
equal
deleted
inserted
replaced
6:1776b8ddd87e | 7:3f7b0788a1c4 |
---|---|
1 <tool id="filtersam_mapped_and_unique" name="filtersam_mapped_and_unique" version="0.01"> | 1 <tool id="filtersam_mapped_and_unique" name="filtersam_mapped_and_unique" version="1.01"> |
2 <description>Filter SAM file for uniq and well mapped pair-end reads</description> | 2 <description>Filter SAM file for uniq and well mapped pair-end reads</description> |
3 <command interpreter="perl"> | 3 <command interpreter="perl"> |
4 filtersam_mapped_and_unique.pl $input_sam_file > $output_file | 4 filtersam_mapped_and_unique.pl -input_sam_file $input_sam_file -log_file $log_file> $output_sam_file |
5 </command> | 5 </command> |
6 <inputs> | 6 <inputs> |
7 <param name="input_sam_file" type="data" format="sam" label="Select a suitable input SAM file from your history"/> | 7 <param name="input_sam_file" type="data" format="sam" label="Select a suitable input SAM file from your history"/> |
8 </inputs> | 8 </inputs> |
9 <outputs> | 9 <outputs> |
10 <data name="output_file" format="sam" label="${tool.name} on ${on_string}"/> | 10 <data name="output_sam_file" format="sam" label="${tool.name} on ${on_string}"/> |
11 <data name="log_file" format="txt" label="${tool.name} LOG on ${on_string}"/> | |
11 </outputs> | 12 </outputs> |
12 | 13 |
13 <help> | 14 <help> |
14 | 15 |
15 | 16 |