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view rapsodyn/filtersam_mapped_and_unique.xml @ 7:3f7b0788a1c4 draft

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author mcharles
date Tue, 07 Oct 2014 10:34:34 -0400
parents 442a7c88b886
children 0a6c1cfe4dc8
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<tool id="filtersam_mapped_and_unique" name="filtersam_mapped_and_unique" version="1.01">
<description>Filter SAM file for uniq and well mapped pair-end reads</description>
<command interpreter="perl">
    filtersam_mapped_and_unique.pl -input_sam_file $input_sam_file -log_file $log_file> $output_sam_file 
</command>
<inputs>
	<param name="input_sam_file"  type="data" format="sam" label="Select a suitable input SAM file from your history"/>
</inputs>
<outputs>
	<data name="output_sam_file" format="sam" label="${tool.name} on ${on_string}"/>
	<data name="log_file" format="txt" label="${tool.name} LOG on ${on_string}"/>
</outputs>

<help>



</help>
</tool>