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view rapsodyn/filtersam_mapped_and_unique.xml @ 0:442a7c88b886 draft

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author mcharles
date Wed, 10 Sep 2014 09:18:15 -0400
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children 3f7b0788a1c4
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<tool id="filtersam_mapped_and_unique" name="filtersam_mapped_and_unique" version="0.01">
<description>Filter SAM file for uniq and well mapped pair-end reads</description>
<command interpreter="perl">
    filtersam_mapped_and_unique.pl $input_sam_file > $output_file 
</command>
<inputs>
<param name="input_sam_file"  type="data" format="sam" label="Select a suitable input SAM file from your history"/>
</inputs>
<outputs>
 <data name="output_file" format="sam" label="${tool.name} on ${on_string}"/>
</outputs>

<help>



</help>
</tool>