diff rapsodyn/filtersam_mapped_and_unique.xml @ 0:442a7c88b886 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/rapsodyn/filtersam_mapped_and_unique.xml	Wed Sep 10 09:18:15 2014 -0400
@@ -0,0 +1,18 @@
+<tool id="filtersam_mapped_and_unique" name="filtersam_mapped_and_unique" version="0.01">
+<description>Filter SAM file for uniq and well mapped pair-end reads</description>
+<command interpreter="perl">
+    filtersam_mapped_and_unique.pl $input_sam_file > $output_file 
+</command>
+<inputs>
+<param name="input_sam_file"  type="data" format="sam" label="Select a suitable input SAM file from your history"/>
+</inputs>
+<outputs>
+ <data name="output_file" format="sam" label="${tool.name} on ${on_string}"/>
+</outputs>
+
+<help>
+
+
+
+</help>
+</tool>