diff NotesToFbc.xml @ 0:c607d6f740e2 draft

planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit 6bb33ff0ff022029543e5e5ace7d16418715aa1c

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/NotesToFbc.xml	Mon Aug 25 16:07:24 2025 +0000
@@ -0,0 +1,26 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<tool id="met4j_NotesToFbc" name="NotesToFbc" version="@TOOL_VERSION@">
+  <description>Convert sbml html notes to fbc package annotations</description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="bio_tools"/>
+  <expand macro="requirements"/>
+  <command detect_errors="exit_code"><![CDATA[met4j convert.NotesToFbc -i "$inputPath"
+ -o "$outputPath"
+]]></command>
+  <inputs>
+    <param argument="-i" format="sbml" label="input SBML file" name="inputPath" optional="false" type="data" value=""/>
+  </inputs>
+  <outputs>
+    <data format="sbml" name="outputPath"/>
+  </outputs>
+  <tests/>
+  <help><![CDATA[Convert sbml html notes to fbc package annotations
+Some old SBML files have notes in the html format. This application will convert them to fbc package annotations.
+Be careful, the app reads only html notes, the existing fbc annotations will be overwritten.
+@ATTRIBUTION@]]></help>
+  <citations>
+    <citation type="doi">10.1515/jib-2017-0082</citation>
+  </citations>
+</tool>