annotate NotesToFbc.xml @ 0:c607d6f740e2 draft

planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit 6bb33ff0ff022029543e5e5ace7d16418715aa1c

<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<tool id="met4j_NotesToFbc" name="NotesToFbc" version="@TOOL_VERSION@">
  <description>Convert sbml html notes to fbc package annotations</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="bio_tools"/>
  <expand macro="requirements"/>
  <command detect_errors="exit_code"><![CDATA[met4j convert.NotesToFbc -i "$inputPath"
 -o "$outputPath"
]]></command>
  <inputs>
    <param argument="-i" format="sbml" label="input SBML file" name="inputPath" optional="false" type="data" value=""/>
  </inputs>
  <outputs>
    <data format="sbml" name="outputPath"/>
  </outputs>
  <tests/>
  <help><![CDATA[Convert sbml html notes to fbc package annotations
Some old SBML files have notes in the html format. This application will convert them to fbc package annotations.
Be careful, the app reads only html notes, the existing fbc annotations will be overwritten.
@ATTRIBUTION@]]></help>
  <citations>
    <citation type="doi">10.1515/jib-2017-0082</citation>
  </citations>
</tool>