comparison Sbml2CompoundGraph.xml @ 1:e4fe3d5892dd draft

planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit 6bb33ff0ff022029543e5e5ace7d16418715aa1c

0:533e924a57f6

  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="bio_tools"/>
  <expand macro="requirements"/>
  <command detect_errors="exit_code"><![CDATA[met4j fr.inrae.toulouse.metexplore.met4j_toolbox.convert.Sbml2CompoundGraph -i "$inputPath"
#if str($inputSide) != 'None':
 -sc "$inputSide"
#end if
#if str($mergingStrat):
 -mc "$mergingStrat"

      <option value="json">json</option>
      <option value="matrix">matrix</option>
    </param>
  </inputs>
  <outputs>
    <data format="txt" name="output"/>
  </outputs>
  <tests>
    <test>
      <param name="inputPath" value="XF_network.sbml"/>
      <param name="inputSide" value="XF_network_C_Side.tab"/>

1:e4fe3d5892dd

  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="bio_tools"/>
  <expand macro="requirements"/>
  <command detect_errors="exit_code"><![CDATA[met4j convert.Sbml2CompoundGraph -i "$inputPath"
#if str($inputSide) != 'None':
 -sc "$inputSide"
#end if
#if str($mergingStrat):
 -mc "$mergingStrat"

      <option value="json">json</option>
      <option value="matrix">matrix</option>
    </param>
  </inputs>
  <outputs>
    <data format="txt" name="output">
      <change_format>
        <when input="format" value="tab" format="tabular" />
        <when input="format" value="json" format="json" />
        <when input="format" value="matrix" format="csv" />
      </change_format>
    </data>
  </outputs>
  <tests>
    <test>
      <param name="inputPath" value="XF_network.sbml"/>
      <param name="inputSide" value="XF_network_C_Side.tab"/>