Mercurial > repos > metexplore > met4j_sbml2compoundgraph
changeset 1:e4fe3d5892dd draft
planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit 6bb33ff0ff022029543e5e5ace7d16418715aa1c
| author | metexplore |
|---|---|
| date | Mon, 25 Aug 2025 16:08:00 +0000 |
| parents | 533e924a57f6 |
| children | c6d7b50aa5b9 |
| files | Sbml2CompoundGraph.xml macros.xml |
| diffstat | 2 files changed, 12 insertions(+), 5 deletions(-) [+] |
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--- a/Sbml2CompoundGraph.xml Thu Mar 13 15:49:24 2025 +0000 +++ b/Sbml2CompoundGraph.xml Mon Aug 25 16:08:00 2025 +0000 @@ -6,7 +6,7 @@ </macros> <expand macro="bio_tools"/> <expand macro="requirements"/> - <command detect_errors="exit_code"><![CDATA[met4j fr.inrae.toulouse.metexplore.met4j_toolbox.convert.Sbml2CompoundGraph -i "$inputPath" + <command detect_errors="exit_code"><![CDATA[met4j convert.Sbml2CompoundGraph -i "$inputPath" #if str($inputSide) != 'None': -sc "$inputSide" #end if @@ -49,7 +49,13 @@ </param> </inputs> <outputs> - <data format="txt" name="output"/> + <data format="txt" name="output"> + <change_format> + <when input="format" value="tab" format="tabular" /> + <when input="format" value="json" format="json" /> + <when input="format" value="matrix" format="csv" /> + </change_format> + </data> </outputs> <tests> <test>
--- a/macros.xml Thu Mar 13 15:49:24 2025 +0000 +++ b/macros.xml Mon Aug 25 16:08:00 2025 +0000 @@ -1,8 +1,9 @@ <?xml version="1.0"?> +<!-- This file has been automatically generated by the met4j app GenerateGalaxyFiles. Please don't edit manually. --> <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="2.0.1">met4j</requirement> + <requirement type="package" version="2.1.0">met4j</requirement> <yield/> </requirements> </xml> @@ -11,10 +12,10 @@ <xref type="bio.tools">met4j</xref> </xrefs> </xml> - <token name="@TOOL_VERSION@">2.0.1</token> + <token name="@TOOL_VERSION@">2.1.0</token> <token name="@ATTRIBUTION@"><![CDATA[ **Attribution** -This Galaxy tool relies on the met4j toolkit which is dedicated to the structural analysis of metabolic networks (https://forgemia.inra.fr/metexplore/met4j) +This Galaxy tool relies on the met4j toolkit which is dedicated to the structural analysis of metabolic networks (https://forge.inrae.fr/metexplore/met4j) ]]></token> </macros> \ No newline at end of file