Mercurial > repos > mheinzl > fsd_bvsa
diff test-data/output_file.tabular @ 8:238a71241876 draft
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd_beforevsafter commit dfaab79252a858e8df16bbea3607ebf1b6962e5a-dirty
| author | mheinzl |
|---|---|
| date | Mon, 08 Oct 2018 05:55:14 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/output_file.tabular Mon Oct 08 05:55:14 2018 -0400 @@ -0,0 +1,46 @@ +Dataset: Test_data.tabular + AB BA +max. family size: 85 332 +absolute frequency: 1 1 +relative frequency: 0.062 0.062 + + + +total nr. of reads 1312 + + +Values from family size distribution + before SSCS building after DCS building after trimming after alignment to reference +FS=1 0 0 0 0 +FS=2 0 0 0 0 +FS=3 1 8 0 1 +FS=4 2 10 6 2 +FS=5 2 5 3 2 +FS=6 1 3 3 1 +FS=7 5 5 3 5 +FS=8 1 2 0 1 +FS=9 3 2 1 3 +FS=10 2 2 3 2 +FS=11 2 1 0 2 +FS=12 0 0 1 0 +FS=13 0 0 4 0 +FS=14 0 0 0 0 +FS=15 1 0 1 1 +FS=16 0 1 3 0 +FS=17 0 0 3 0 +FS=18 0 3 0 0 +FS=19 0 0 0 0 +FS=20 0 0 0 0 +FS>20 12 8 3 12 +sum 32 50 34 32 + + +In the plot, the family sizes of ab and ba strands and of both duplex tags were used. +Whereas the total numbers indicate only the single count of the formed duplex tags. +total nr. of tags (unique, FS>=1) 16 +DCS (before SSCS building, FS>=1) 16 +total nr. of tags (unique, FS>=3) 16 +DCS (before SSCS building, FS>=3) 16 +after DCS building 25 +after trimming 17 +after alignment to reference 16