Mercurial > repos > miller-lab > package_fisher_0_1_4
changeset 0:c84c287b81a4
Initial version
| author | miller-lab |
|---|---|
| date | Thu, 19 Sep 2013 18:14:12 -0400 |
| parents | |
| children | be2fc454d121 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 32 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu Sep 19 18:14:12 2013 -0400 @@ -0,0 +1,32 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="numpy" version="1.7.1"> + <repository prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu/" owner="iuc" name="package_numpy_1_7" changeset_revision="74c21f9bdc39" /> + </package> + + <package name="fisher" version="0.1.4"> + <install version="1.0"> + <actions> + <!-- Download source code --> + <action type="download_by_url">https://pypi.python.org/packages/source/f/fisher/fisher-0.1.4.tar.gz</action> + + <!-- Get PYTHONPATH_NUMPY from numpy package --> + <action type="set_environment_for_install"> + <repository toolshed="http://toolshed.g2.bx.psu.edu/" owner="iuc" name="package_numpy_1_7" changeset_revision="74c21f9bdc39"> + <package name="numpy" version="1.7.1" /> + </repository> + </action> + + <!-- Build and install fisher --> + <action type="shell_command">mkdir -p $INSTALL_DIR/lib/python</action> + <action type="shell_command">PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$PYTHONPATH_NUMPY python setup.py install --home $INSTALL_DIR</action> + + <!-- Set environment for dependent repositories --> + <action type="set_environment"> + <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> + <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> + </action> + </actions> + </install> + </package> +</tool_dependency>