Mercurial > repos > mingchen0919 > rmarkdown_fastqc_site

annotate _site.yml @ 11:507eec497730 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
update fastqc site
author mingchen0919
date Tue, 07 Nov 2017 16:52:24 -0500
parents d732d4526c6d
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
d732d4526c6d planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastqc_site commit ddb1f6aca7619aea2e660b1729367841b56ba4c9-dirty
mingchen0919
parents:
diff changeset
1 name: "FastQC Website"
d732d4526c6d planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastqc_site commit ddb1f6aca7619aea2e660b1729367841b56ba4c9-dirty
mingchen0919
parents:
diff changeset
2 output_dir: "my_site"
d732d4526c6d planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastqc_site commit ddb1f6aca7619aea2e660b1729367841b56ba4c9-dirty
mingchen0919
parents:
diff changeset
3 navbar:
d732d4526c6d planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastqc_site commit ddb1f6aca7619aea2e660b1729367841b56ba4c9-dirty
mingchen0919
parents:
diff changeset
4 title: "FastQC"
d732d4526c6d planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastqc_site commit ddb1f6aca7619aea2e660b1729367841b56ba4c9-dirty
mingchen0919
parents:
diff changeset
5 type: inverse
d732d4526c6d planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastqc_site commit ddb1f6aca7619aea2e660b1729367841b56ba4c9-dirty
mingchen0919
parents:
diff changeset
6 left:
d732d4526c6d planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastqc_site commit ddb1f6aca7619aea2e660b1729367841b56ba4c9-dirty
mingchen0919
parents:
diff changeset
7 - text: "Home"
d732d4526c6d planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastqc_site commit ddb1f6aca7619aea2e660b1729367841b56ba4c9-dirty
mingchen0919
parents:
diff changeset
8 icon: fa-home
d732d4526c6d planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastqc_site commit ddb1f6aca7619aea2e660b1729367841b56ba4c9-dirty
mingchen0919
parents:
diff changeset
9 href: index.html
d732d4526c6d planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastqc_site commit ddb1f6aca7619aea2e660b1729367841b56ba4c9-dirty
mingchen0919
parents:
diff changeset
10 - text: "Evaluation Overview"
11
507eec497730 update fastqc site
mingchen0919
parents: 0
diff changeset
11 href: x01_evaluation_overview.html
507eec497730 update fastqc site
mingchen0919
parents: 0
diff changeset
12 - text: "Evaluation by data module"
0
d732d4526c6d planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastqc_site commit ddb1f6aca7619aea2e660b1729367841b56ba4c9-dirty
mingchen0919
parents:
diff changeset
13 menu:
11
507eec497730 update fastqc site
mingchen0919
parents: 0
diff changeset
14 - text: "Per Base Sequence Quality"
507eec497730 update fastqc site
mingchen0919
parents: 0
diff changeset
15 href: x02_per_base_sequence_quality.html
507eec497730 update fastqc site
mingchen0919
parents: 0
diff changeset
16 - text: "Per Tile Sequence Quality"
507eec497730 update fastqc site
mingchen0919
parents: 0
diff changeset
17 href: x03_per_tile_sequence_quality.html
507eec497730 update fastqc site
mingchen0919
parents: 0
diff changeset
18 - text: "Per Sequence Quality Score"
507eec497730 update fastqc site
mingchen0919
parents: 0
diff changeset
19 href: x04_per_sequence_quality_score.html
507eec497730 update fastqc site
mingchen0919
parents: 0
diff changeset
20 - text: "Per Base Sequence Content"
507eec497730 update fastqc site
mingchen0919
parents: 0
diff changeset
21 href: x05_per_base_sequence_content.html
507eec497730 update fastqc site
mingchen0919
parents: 0
diff changeset
22 - text: "Per Sequence GC Content"
507eec497730 update fastqc site
mingchen0919
parents: 0
diff changeset
23 href: x06_per_sequence_gc_content.html
0
d732d4526c6d planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastqc_site commit ddb1f6aca7619aea2e660b1729367841b56ba4c9-dirty
mingchen0919
parents:
diff changeset
24 - text: "Per Base N Content"
11
507eec497730 update fastqc site
mingchen0919
parents: 0
diff changeset
25 href: x07_per_base_n_content.html
507eec497730 update fastqc site
mingchen0919
parents: 0
diff changeset
26 - text: "Sequence Length Distribution"
507eec497730 update fastqc site
mingchen0919
parents: 0
diff changeset
27 href: x08_sequence_length_distribution.html
507eec497730 update fastqc site
mingchen0919
parents: 0
diff changeset
28 - text: "Sequence Duplication Levels"
507eec497730 update fastqc site
mingchen0919
parents: 0
diff changeset
29 href: x09_sequence_duplication_levels.html
507eec497730 update fastqc site
mingchen0919
parents: 0
diff changeset
30 - text: "Adapter Content"
507eec497730 update fastqc site
mingchen0919
parents: 0
diff changeset
31 href: x10_adapter_content.html
507eec497730 update fastqc site
mingchen0919
parents: 0
diff changeset
32 - text: "Kmer Content"
507eec497730 update fastqc site
mingchen0919
parents: 0
diff changeset
33 href: x11_kmer_content.html
0
d732d4526c6d planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastqc_site commit ddb1f6aca7619aea2e660b1729367841b56ba4c9-dirty
mingchen0919
parents:
diff changeset
34 output:
d732d4526c6d planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastqc_site commit ddb1f6aca7619aea2e660b1729367841b56ba4c9-dirty
mingchen0919
parents:
diff changeset
35 html_document:
d732d4526c6d planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastqc_site commit ddb1f6aca7619aea2e660b1729367841b56ba4c9-dirty
mingchen0919
parents:
diff changeset
36 theme: cosmo
d732d4526c6d planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastqc_site commit ddb1f6aca7619aea2e660b1729367841b56ba4c9-dirty
mingchen0919
parents:
diff changeset
37 highlight: textmate