Mercurial > repos > mingchen0919 > rmarkdown_i_adhore

changeset 6:8cf3b1298508 draft

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planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_i_adhore commit 60ea96204588be4348bd5d7879d1eb0d73f487c7-dirty
author mingchen0919
date Tue, 15 Aug 2017 15:38:10 -0400
parents dab02b629d48
children f86be5aeea36
files i_adhore_configure.Rmd
diffstat 1 files changed, 1 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/i_adhore_configure.Rmd	Tue Aug 15 15:35:23 2017 -0400
+++ b/i_adhore_configure.Rmd	Tue Aug 15 15:38:10 2017 -0400
@@ -47,9 +47,8 @@
 # Other parameters
 
 ```{r}
-data_dir = gsub('dataset_.*dat', '', opt$blast_table)
 output_dir = tail(strsplit(opt$i_adhore_configure_dir, '/')[[1]], 1)
-output_path = paste(data_dir, output_dir, sep = '')
+output_path = gsub('dataset_.*dat', output_dir, opt$blast_table)
                   
 params = c(
   'blast_table' = opt$blast_table,