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annotate mmseq.sh @ 0:4a253e6e134a

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Uploaded mmseq pipeline analysis tool
author mmseq
date Mon, 15 Aug 2011 11:50:28 -0400
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4a253e6e134a Uploaded mmseq pipeline analysis tool
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1 #!/bin/bash
4a253e6e134a Uploaded mmseq pipeline analysis tool
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2
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3 TEMP=bam.hits
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4 bam2hits $1 $2 > $TEMP 2> /dev/null
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5 mmseq $TEMP output > /dev/null
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6 mv output.mmseq $3
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7 mv output.gene.mmseq $4
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8 mv output.amalgamated.mmseq $5