annotate butterfly_crossplot.xml @ 3:9daba7983d38 draft

Uploaded
author mnhn65mo
date Mon, 13 Aug 2018 06:28:25 -0400
parents af2cdd97a434
children 372573509133
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
1 <tool id="Butterfly_crossplot" name="Butterfly data analysis" version="0.1.0">
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
2 <requirements>
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
3 <requirement type="package" version="2.2.1">r-ggplot2</requirement>
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
4 <requirement type="package" version="1.1_2">r-rcolorbrewer</requirement>
3
9daba7983d38 Uploaded
mnhn65mo
parents: 0
diff changeset
5 <requirement type="package" version="0.9.10">xorg-libxrender</requirement>
0
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
6 </requirements>
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
7 <command detect_errors="exit_code"><![CDATA[
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
8 Rscript '$__tool_directory__/butterfly_crossplot.R' '$__tool_directory__/stat_bag.r' '$butterfly_db' '$__tool_directory__/code_couleurs.csv' '$function'
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
9 ##'$__tool_directory__/BDD_PAPILLONS_2016.txt'
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
10 ]]></command>
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
11 <inputs>
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
12 <param name="function" type="select" label="Chose your analyse">
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
13 <option value="ggCompareLevel">Compare production methods</option>
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
14 <option value="ggfiltre1niveau">Compare regions</option>
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
15 <option value="gglocal">Compare local networks</option>
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
16 </param>
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
17 <param name="butterfly_db" type="data" format="csv,tabular" label="Butterfly datafile"/>
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
18 </inputs>
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
19 <outputs>
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
20 <data format="png" name="ggCompareLevel" label="Compare production methods" from_work_dir="resultats/Papillons_CONDUITEPARCELLE_comparaison.png">
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
21 <filter>function=='ggCompareLevel'</filter>
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
22 </data>
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
23 <collection type="list" name="output_ggfiltre" label="Compare regions">
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
24 <discover_datasets pattern="__designation_and_ext__" visible="false" format="png" directory="resultats"/>
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
25 <filter>function=='ggfiltre1niveau'</filter>
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
26 </collection>
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
27 <collection type="list" name="output_gglocal" label="Compare local network">
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
28 <discover_datasets pattern="__designation_and_ext__" visible="false" format="png" directory="resultats"/>
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
29 <filter>function=='gglocal'</filter>
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
30 </collection>
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
31 </outputs>
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
32 <help><![CDATA[
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
33 TODO: Fill in help.
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
34 ]]></help>
af2cdd97a434 Uploaded
mnhn65mo
parents:
diff changeset
35 </tool>