Mercurial > repos > nanettec > qtlmap_15
comparison qtlmap_15/test-data/input/qtlcart_original.map.txt @ 0:fa0693cf076b draft
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| author | nanettec |
|---|---|
| date | Fri, 18 Mar 2016 05:51:39 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:fa0693cf076b |
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| 1 # 671562676 -filetype Rmap.out | |
| 2 # | |
| 3 # QTL Cartographer v. 1.17e, 27 August 2003 | |
| 4 # This output file (\\Trin.bi.up.ac.za\duncan\GLS_project\Pipe_line\MeQTL\NewMcd01.map) was created by RMap... | |
| 5 # | |
| 6 # It is 12:22:33 on Tuesday, 24 July 2012 | |
| 7 # | |
| 8 # | |
| 9 # | |
| 10 # Here is the Map of Markers... | |
| 11 -s | |
| 12 -f 2 Map function [1,8]: Haldane is 1 | |
| 13 -p 0.0000 Extra parameter for map functions [4-8] | |
| 14 -u c The units of measurement is centiMorgans. | |
| 15 # | |
| 16 # Markermap parameters | |
| 17 # | |
| 18 -c 10 Number of chromosomes. | |
| 19 -i 167 Total number of markers. | |
| 20 -m 16 Mean, and... | |
| 21 -vm 4.9001 ...standard deviation for Markers/Chromosome. | |
| 22 -d 11.8571 Mean, and... | |
| 23 -vd 6.0265 ...standard deviation for the intermarker distance. | |
| 24 -t -1.#IND Mean length of material outside the flanking markers. | |
| 25 # | |
| 26 | Chromosome----> | |
| 27 -------------------------------------------------------------------------------------------- | |
| 28 Marker | 1 2 3 4 5 6 7 8 9 10 | |
| 29 -------------------------------------------------------------------------------------------- | |
| 30 -l 0 | 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 | |
| 31 -l 1 | 7.5300 13.2700 11.7500 19.0000 3.2000 5.6200 9.0300 10.7400 17.9400 15.0200 | |
| 32 -l 2 | 11.2400 26.0000 13.8400 10.5900 22.8200 8.9200 11.5700 14.7000 9.5600 17.5500 | |
| 33 -l 3 | 19.9400 25.6300 16.5400 6.3400 7.5600 14.4900 10.2300 13.2900 18.4400 13.4800 | |
| 34 -l 4 | 5.9100 17.1400 9.1100 17.1500 6.6500 6.8300 10.2300 11.4100 19.1100 6.9400 | |
| 35 -l 5 | 4.1100 8.5600 10.0400 3.0800 9.6900 5.7300 4.1400 17.3300 27.0800 22.1800 | |
| 36 -l 6 | 4.4800 10.4300 10.7400 14.0900 11.8600 19.4000 10.2400 15.8400 5.6800 6.3800 | |
| 37 -l 7 | 16.7600 10.7100 6.1200 4.6300 15.4300 4.2800 7.7500 12.7700 22.7000 9.0700 | |
| 38 -l 8 | 11.9000 5.3500 2.3600 17.3300 9.4900 6.4500 13.1400 3.2300 4.2700 8.0500 | |
| 39 -l 9 | 14.2300 15.5300 22.9100 6.1700 7.7200 17.1500 11.3000 3.5800 15.6000 5.9300 | |
| 40 -l 10 | 16.6000 8.8600 26.3700 12.9000 5.2800 26.9500 18.6800 15.3100 18.4000 13.0300 | |
| 41 -l 11 | 14.1300 8.5600 7.0100 8.9700 11.4100 9.7400 4.8500 9.6600 0.0000 12.9000 | |
| 42 -l 12 | 15.8600 16.2000 18.3000 7.6500 13.8900 13.8200 0.0000 3.1300 16.9500 | |
| 43 -l 13 | 6.2800 2.8700 6.1200 9.7600 8.3200 20.3800 10.3200 0.0000 | |
| 44 -l 14 | 15.3100 0.0000 16.3500 9.6600 7.7900 2.5400 0.0000 | |
| 45 -l 15 | 14.8400 10.9700 4.2500 23.2000 19.9200 | |
| 46 -l 16 | 8.1200 10.6200 17.0500 14.6200 13.6300 | |
| 47 -l 17 | 6.1800 14.4500 5.5800 11.9000 0.0000 | |
| 48 -l 18 | 8.7100 7.6900 9.1900 6.7100 | |
| 49 -l 19 | 33.9500 0.0000 4.9800 6.2800 | |
| 50 -l 20 | 19.7800 0.0000 0.0000 | |
| 51 -l 21 | 8.9400 | |
| 52 -l 22 | 10.2300 | |
| 53 -l 23 | 22.0600 | |
| 54 -l 24 | 3.1000 | |
| 55 -l 25 | 14.8400 | |
| 56 -l 26 | 9.3700 | |
| 57 -l 27 | 0.0000 | |
| 58 -------------------------------------------------------------------------------------------- | |
| 59 -Number | 27 14 19 20 20 17 12 14 11 13 | |
| 60 | |
| 61 | |
| 62 | |
| 63 Names and positions of the markers | |
| 64 | |
| 65 Chrom Mark Name | |
| 66 -b MarkerNames | |
| 67 1 1 phi056 | |
| 68 1 2 bnl5.62 | |
| 69 1 3 umc1041 | |
| 70 1 4 umc157a | |
| 71 1 5 bnlg1178 | |
| 72 1 6 bnlg1429 | |
| 73 1 7 bnlg1627 | |
| 74 1 8 umc11a | |
| 75 1 9 bnlg439 | |
| 76 1 10 bnlg2238 | |
| 77 1 11 Bnlg1811_U | |
| 78 1 12 bnlg2086 | |
| 79 1 13 csu61b | |
| 80 1 14 bnlg1057 | |
| 81 1 15 umc1122 | |
| 82 1 16 Bnlg615_U | |
| 83 1 17 umc1128 | |
| 84 1 18 umc166b | |
| 85 1 19 dupssr12 | |
| 86 1 20 phi011 | |
| 87 1 21 bnlg1720 | |
| 88 1 22 umc106a | |
| 89 1 23 umc147b | |
| 90 1 24 umc1111_P | |
| 91 1 25 bnlg2331 | |
| 92 1 26 bnlg2123 | |
| 93 1 27 bnl6.32 | |
| 94 2 1 phi402893 | |
| 95 2 2 bnlg1297 | |
| 96 2 3 bnlg2042 | |
| 97 2 4 umc44b | |
| 98 2 5 csu40 | |
| 99 2 6 umc135 | |
| 100 2 7 csu54a | |
| 101 2 8 umc55a | |
| 102 2 9 umc14b | |
| 103 2 10 csu154a | |
| 104 2 11 umc150b | |
| 105 2 12 umc1551 | |
| 106 2 13 umc36a | |
| 107 2 14 csu109a | |
| 108 3 1 umc32a | |
| 109 3 2 phi104127 | |
| 110 3 3 bnlg1325 | |
| 111 3 4 bnlg1447 | |
| 112 3 5 umc92a | |
| 113 3 6 bnlg1019a | |
| 114 3 7 phi053 | |
| 115 3 8 bnlg420 | |
| 116 3 9 umc1307 | |
| 117 3 10 Phi073_U | |
| 118 3 11 Bnlg1449_U | |
| 119 3 12 bnl10.24a | |
| 120 3 13 unknown1 | |
| 121 3 14 umc3b | |
| 122 3 15 umc16a | |
| 123 3 16 bnlg1108_P | |
| 124 3 17 umc63a | |
| 125 3 18 bnlg1182 | |
| 126 3 19 bnlg1754 | |
| 127 4 1 umc1017 | |
| 128 4 2 umc1294 | |
| 129 4 3 phi021 | |
| 130 4 4 umc1550 | |
| 131 4 5 umc1652 | |
| 132 4 6 bnlg490 | |
| 133 4 7 csu100 | |
| 134 4 8 umc156a | |
| 135 4 9 bnlg2291 | |
| 136 4 10 umc19 | |
| 137 4 11 mmc0341 | |
| 138 4 12 umc133a | |
| 139 4 13 umc15a | |
| 140 4 14 csu11b | |
| 141 4 15 npi593a | |
| 142 4 16 bnlg589 | |
| 143 4 17 umc1720_P | |
| 144 4 18 bnlg1337 | |
| 145 4 19 phi019 | |
| 146 4 20 phi006 | |
| 147 5 1 bnl8.33 | |
| 148 5 2 npi409 | |
| 149 5 3 umc147a | |
| 150 5 4 umc90 | |
| 151 5 5 umc107b | |
| 152 5 6 Bnlg105_U | |
| 153 5 7 bnlg1046 | |
| 154 5 8 umc166a | |
| 155 5 9 bnl6.22 | |
| 156 5 10 csu36b | |
| 157 5 11 DupSSR10_U | |
| 158 5 12 bnl5.71a | |
| 159 5 13 umc1155_P | |
| 160 5 14 npi237 | |
| 161 5 15 umc54 | |
| 162 5 16 bnlg1346 | |
| 163 5 17 bnlg118 | |
| 164 5 18 umc1225 | |
| 165 5 19 umc104b | |
| 166 5 20 bnlg1885 | |
| 167 6 1 umc85a | |
| 168 6 2 bnlg426 | |
| 169 6 3 umc36c | |
| 170 6 4 umc1572_P | |
| 171 6 5 Bnlg2191_U | |
| 172 6 6 bnlg2151 | |
| 173 6 7 umc1887 | |
| 174 6 8 umc65a | |
| 175 6 9 umc1014 | |
| 176 6 10 bnlg1922 | |
| 177 6 11 umc1413_P | |
| 178 6 12 mmc0241 | |
| 179 6 13 umc1424_P | |
| 180 6 14 umc36 | |
| 181 6 15 umc39 | |
| 182 6 16 bnlg1740 | |
| 183 6 17 umc2059 | |
| 184 7 1 csu13 | |
| 185 7 2 bnlg1094 | |
| 186 7 3 umc1393 | |
| 187 7 4 bnlg1808 | |
| 188 7 5 bnl15.21 | |
| 189 7 6 bnlg339 | |
| 190 7 7 bnlg155 | |
| 191 7 8 bnlg1805 | |
| 192 7 9 bnl14.07 | |
| 193 7 10 umc1125 | |
| 194 7 11 phi082 | |
| 195 7 12 umc1799 | |
| 196 8 1 npi114a | |
| 197 8 2 umc1327 | |
| 198 8 3 npi110a | |
| 199 8 4 umc103a | |
| 200 8 5 bnlg669 | |
| 201 8 6 umc1858 | |
| 202 8 7 umc1562_P | |
| 203 8 8 umc48a | |
| 204 8 9 asg52a | |
| 205 8 10 umc150a | |
| 206 8 11 umc1384 | |
| 207 8 12 umc7 | |
| 208 8 13 bnlg1056 | |
| 209 8 14 umc39b | |
| 210 9 1 bnlg1272 | |
| 211 9 2 umc113a | |
| 212 9 3 umc1170_P | |
| 213 9 4 umc105a | |
| 214 9 5 umc81 | |
| 215 9 6 bnl8.17 | |
| 216 9 7 umc1231 | |
| 217 9 8 umc1733 | |
| 218 9 9 bnlg1588 | |
| 219 9 10 bnlg1375 | |
| 220 9 11 umc1137 | |
| 221 10 1 phi118 | |
| 222 10 2 npi285a | |
| 223 10 3 umc1337_P | |
| 224 10 4 umc130 | |
| 225 10 5 bnlg1079 | |
| 226 10 6 umc1115 | |
| 227 10 7 npi232a | |
| 228 10 8 umc44a | |
| 229 10 9 umc182 | |
| 230 10 10 bnlg236 | |
| 231 10 11 bnl7.49a | |
| 232 10 12 bnlg1450 | |
| 233 10 13 umc1038 | |
| 234 -e MarkerNames | |
| 235 | |
| 236 | |
| 237 | |
| 238 Names of the Chromosomes | |
| 239 | |
| 240 -b ChromosomeNames | |
| 241 1 Ch1 | |
| 242 2 Ch2 | |
| 243 3 Ch3 | |
| 244 4 Ch4 | |
| 245 5 Ch5 | |
| 246 6 Ch6 | |
| 247 7 Ch7 | |
| 248 8 Ch8 | |
| 249 9 Ch9 | |
| 250 10 Ch10 | |
| 251 -e ChromosomeNames |