Mercurial > repos > nanettec > qtlmap_15
diff qtlmap_15/test-data/input/qtlcart_original.map.txt @ 0:fa0693cf076b draft
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| author | nanettec |
|---|---|
| date | Fri, 18 Mar 2016 05:51:39 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qtlmap_15/test-data/input/qtlcart_original.map.txt Fri Mar 18 05:51:39 2016 -0400 @@ -0,0 +1,251 @@ +# 671562676 -filetype Rmap.out +# +# QTL Cartographer v. 1.17e, 27 August 2003 +# This output file (\\Trin.bi.up.ac.za\duncan\GLS_project\Pipe_line\MeQTL\NewMcd01.map) was created by RMap... +# +# It is 12:22:33 on Tuesday, 24 July 2012 +# +# +# +# Here is the Map of Markers... +-s +-f 2 Map function [1,8]: Haldane is 1 +-p 0.0000 Extra parameter for map functions [4-8] +-u c The units of measurement is centiMorgans. +# +# Markermap parameters +# +-c 10 Number of chromosomes. +-i 167 Total number of markers. +-m 16 Mean, and... +-vm 4.9001 ...standard deviation for Markers/Chromosome. +-d 11.8571 Mean, and... +-vd 6.0265 ...standard deviation for the intermarker distance. +-t -1.#IND Mean length of material outside the flanking markers. +# + | Chromosome----> +-------------------------------------------------------------------------------------------- +Marker | 1 2 3 4 5 6 7 8 9 10 +-------------------------------------------------------------------------------------------- +-l 0 | 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 +-l 1 | 7.5300 13.2700 11.7500 19.0000 3.2000 5.6200 9.0300 10.7400 17.9400 15.0200 +-l 2 | 11.2400 26.0000 13.8400 10.5900 22.8200 8.9200 11.5700 14.7000 9.5600 17.5500 +-l 3 | 19.9400 25.6300 16.5400 6.3400 7.5600 14.4900 10.2300 13.2900 18.4400 13.4800 +-l 4 | 5.9100 17.1400 9.1100 17.1500 6.6500 6.8300 10.2300 11.4100 19.1100 6.9400 +-l 5 | 4.1100 8.5600 10.0400 3.0800 9.6900 5.7300 4.1400 17.3300 27.0800 22.1800 +-l 6 | 4.4800 10.4300 10.7400 14.0900 11.8600 19.4000 10.2400 15.8400 5.6800 6.3800 +-l 7 | 16.7600 10.7100 6.1200 4.6300 15.4300 4.2800 7.7500 12.7700 22.7000 9.0700 +-l 8 | 11.9000 5.3500 2.3600 17.3300 9.4900 6.4500 13.1400 3.2300 4.2700 8.0500 +-l 9 | 14.2300 15.5300 22.9100 6.1700 7.7200 17.1500 11.3000 3.5800 15.6000 5.9300 +-l 10 | 16.6000 8.8600 26.3700 12.9000 5.2800 26.9500 18.6800 15.3100 18.4000 13.0300 +-l 11 | 14.1300 8.5600 7.0100 8.9700 11.4100 9.7400 4.8500 9.6600 0.0000 12.9000 +-l 12 | 15.8600 16.2000 18.3000 7.6500 13.8900 13.8200 0.0000 3.1300 16.9500 +-l 13 | 6.2800 2.8700 6.1200 9.7600 8.3200 20.3800 10.3200 0.0000 +-l 14 | 15.3100 0.0000 16.3500 9.6600 7.7900 2.5400 0.0000 +-l 15 | 14.8400 10.9700 4.2500 23.2000 19.9200 +-l 16 | 8.1200 10.6200 17.0500 14.6200 13.6300 +-l 17 | 6.1800 14.4500 5.5800 11.9000 0.0000 +-l 18 | 8.7100 7.6900 9.1900 6.7100 +-l 19 | 33.9500 0.0000 4.9800 6.2800 +-l 20 | 19.7800 0.0000 0.0000 +-l 21 | 8.9400 +-l 22 | 10.2300 +-l 23 | 22.0600 +-l 24 | 3.1000 +-l 25 | 14.8400 +-l 26 | 9.3700 +-l 27 | 0.0000 +-------------------------------------------------------------------------------------------- +-Number | 27 14 19 20 20 17 12 14 11 13 + + + +Names and positions of the markers + + Chrom Mark Name +-b MarkerNames + 1 1 phi056 + 1 2 bnl5.62 + 1 3 umc1041 + 1 4 umc157a + 1 5 bnlg1178 + 1 6 bnlg1429 + 1 7 bnlg1627 + 1 8 umc11a + 1 9 bnlg439 + 1 10 bnlg2238 + 1 11 Bnlg1811_U + 1 12 bnlg2086 + 1 13 csu61b + 1 14 bnlg1057 + 1 15 umc1122 + 1 16 Bnlg615_U + 1 17 umc1128 + 1 18 umc166b + 1 19 dupssr12 + 1 20 phi011 + 1 21 bnlg1720 + 1 22 umc106a + 1 23 umc147b + 1 24 umc1111_P + 1 25 bnlg2331 + 1 26 bnlg2123 + 1 27 bnl6.32 + 2 1 phi402893 + 2 2 bnlg1297 + 2 3 bnlg2042 + 2 4 umc44b + 2 5 csu40 + 2 6 umc135 + 2 7 csu54a + 2 8 umc55a + 2 9 umc14b + 2 10 csu154a + 2 11 umc150b + 2 12 umc1551 + 2 13 umc36a + 2 14 csu109a + 3 1 umc32a + 3 2 phi104127 + 3 3 bnlg1325 + 3 4 bnlg1447 + 3 5 umc92a + 3 6 bnlg1019a + 3 7 phi053 + 3 8 bnlg420 + 3 9 umc1307 + 3 10 Phi073_U + 3 11 Bnlg1449_U + 3 12 bnl10.24a + 3 13 unknown1 + 3 14 umc3b + 3 15 umc16a + 3 16 bnlg1108_P + 3 17 umc63a + 3 18 bnlg1182 + 3 19 bnlg1754 + 4 1 umc1017 + 4 2 umc1294 + 4 3 phi021 + 4 4 umc1550 + 4 5 umc1652 + 4 6 bnlg490 + 4 7 csu100 + 4 8 umc156a + 4 9 bnlg2291 + 4 10 umc19 + 4 11 mmc0341 + 4 12 umc133a + 4 13 umc15a + 4 14 csu11b + 4 15 npi593a + 4 16 bnlg589 + 4 17 umc1720_P + 4 18 bnlg1337 + 4 19 phi019 + 4 20 phi006 + 5 1 bnl8.33 + 5 2 npi409 + 5 3 umc147a + 5 4 umc90 + 5 5 umc107b + 5 6 Bnlg105_U + 5 7 bnlg1046 + 5 8 umc166a + 5 9 bnl6.22 + 5 10 csu36b + 5 11 DupSSR10_U + 5 12 bnl5.71a + 5 13 umc1155_P + 5 14 npi237 + 5 15 umc54 + 5 16 bnlg1346 + 5 17 bnlg118 + 5 18 umc1225 + 5 19 umc104b + 5 20 bnlg1885 + 6 1 umc85a + 6 2 bnlg426 + 6 3 umc36c + 6 4 umc1572_P + 6 5 Bnlg2191_U + 6 6 bnlg2151 + 6 7 umc1887 + 6 8 umc65a + 6 9 umc1014 + 6 10 bnlg1922 + 6 11 umc1413_P + 6 12 mmc0241 + 6 13 umc1424_P + 6 14 umc36 + 6 15 umc39 + 6 16 bnlg1740 + 6 17 umc2059 + 7 1 csu13 + 7 2 bnlg1094 + 7 3 umc1393 + 7 4 bnlg1808 + 7 5 bnl15.21 + 7 6 bnlg339 + 7 7 bnlg155 + 7 8 bnlg1805 + 7 9 bnl14.07 + 7 10 umc1125 + 7 11 phi082 + 7 12 umc1799 + 8 1 npi114a + 8 2 umc1327 + 8 3 npi110a + 8 4 umc103a + 8 5 bnlg669 + 8 6 umc1858 + 8 7 umc1562_P + 8 8 umc48a + 8 9 asg52a + 8 10 umc150a + 8 11 umc1384 + 8 12 umc7 + 8 13 bnlg1056 + 8 14 umc39b + 9 1 bnlg1272 + 9 2 umc113a + 9 3 umc1170_P + 9 4 umc105a + 9 5 umc81 + 9 6 bnl8.17 + 9 7 umc1231 + 9 8 umc1733 + 9 9 bnlg1588 + 9 10 bnlg1375 + 9 11 umc1137 + 10 1 phi118 + 10 2 npi285a + 10 3 umc1337_P + 10 4 umc130 + 10 5 bnlg1079 + 10 6 umc1115 + 10 7 npi232a + 10 8 umc44a + 10 9 umc182 + 10 10 bnlg236 + 10 11 bnl7.49a + 10 12 bnlg1450 + 10 13 umc1038 +-e MarkerNames + + + +Names of the Chromosomes + +-b ChromosomeNames + 1 Ch1 + 2 Ch2 + 3 Ch3 + 4 Ch4 + 5 Ch5 + 6 Ch6 + 7 Ch7 + 8 Ch8 + 9 Ch9 + 10 Ch10 +-e ChromosomeNames