Mercurial > repos > nanettec > qtlmap_15
view qtlmap_15/test-data/input/qtlcart_original.map.txt @ 0:fa0693cf076b draft
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| author | nanettec |
|---|---|
| date | Fri, 18 Mar 2016 05:51:39 -0400 |
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# 671562676 -filetype Rmap.out # # QTL Cartographer v. 1.17e, 27 August 2003 # This output file (\\Trin.bi.up.ac.za\duncan\GLS_project\Pipe_line\MeQTL\NewMcd01.map) was created by RMap... # # It is 12:22:33 on Tuesday, 24 July 2012 # # # # Here is the Map of Markers... -s -f 2 Map function [1,8]: Haldane is 1 -p 0.0000 Extra parameter for map functions [4-8] -u c The units of measurement is centiMorgans. # # Markermap parameters # -c 10 Number of chromosomes. -i 167 Total number of markers. -m 16 Mean, and... -vm 4.9001 ...standard deviation for Markers/Chromosome. -d 11.8571 Mean, and... -vd 6.0265 ...standard deviation for the intermarker distance. -t -1.#IND Mean length of material outside the flanking markers. # | Chromosome----> -------------------------------------------------------------------------------------------- Marker | 1 2 3 4 5 6 7 8 9 10 -------------------------------------------------------------------------------------------- -l 0 | 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 -l 1 | 7.5300 13.2700 11.7500 19.0000 3.2000 5.6200 9.0300 10.7400 17.9400 15.0200 -l 2 | 11.2400 26.0000 13.8400 10.5900 22.8200 8.9200 11.5700 14.7000 9.5600 17.5500 -l 3 | 19.9400 25.6300 16.5400 6.3400 7.5600 14.4900 10.2300 13.2900 18.4400 13.4800 -l 4 | 5.9100 17.1400 9.1100 17.1500 6.6500 6.8300 10.2300 11.4100 19.1100 6.9400 -l 5 | 4.1100 8.5600 10.0400 3.0800 9.6900 5.7300 4.1400 17.3300 27.0800 22.1800 -l 6 | 4.4800 10.4300 10.7400 14.0900 11.8600 19.4000 10.2400 15.8400 5.6800 6.3800 -l 7 | 16.7600 10.7100 6.1200 4.6300 15.4300 4.2800 7.7500 12.7700 22.7000 9.0700 -l 8 | 11.9000 5.3500 2.3600 17.3300 9.4900 6.4500 13.1400 3.2300 4.2700 8.0500 -l 9 | 14.2300 15.5300 22.9100 6.1700 7.7200 17.1500 11.3000 3.5800 15.6000 5.9300 -l 10 | 16.6000 8.8600 26.3700 12.9000 5.2800 26.9500 18.6800 15.3100 18.4000 13.0300 -l 11 | 14.1300 8.5600 7.0100 8.9700 11.4100 9.7400 4.8500 9.6600 0.0000 12.9000 -l 12 | 15.8600 16.2000 18.3000 7.6500 13.8900 13.8200 0.0000 3.1300 16.9500 -l 13 | 6.2800 2.8700 6.1200 9.7600 8.3200 20.3800 10.3200 0.0000 -l 14 | 15.3100 0.0000 16.3500 9.6600 7.7900 2.5400 0.0000 -l 15 | 14.8400 10.9700 4.2500 23.2000 19.9200 -l 16 | 8.1200 10.6200 17.0500 14.6200 13.6300 -l 17 | 6.1800 14.4500 5.5800 11.9000 0.0000 -l 18 | 8.7100 7.6900 9.1900 6.7100 -l 19 | 33.9500 0.0000 4.9800 6.2800 -l 20 | 19.7800 0.0000 0.0000 -l 21 | 8.9400 -l 22 | 10.2300 -l 23 | 22.0600 -l 24 | 3.1000 -l 25 | 14.8400 -l 26 | 9.3700 -l 27 | 0.0000 -------------------------------------------------------------------------------------------- -Number | 27 14 19 20 20 17 12 14 11 13 Names and positions of the markers Chrom Mark Name -b MarkerNames 1 1 phi056 1 2 bnl5.62 1 3 umc1041 1 4 umc157a 1 5 bnlg1178 1 6 bnlg1429 1 7 bnlg1627 1 8 umc11a 1 9 bnlg439 1 10 bnlg2238 1 11 Bnlg1811_U 1 12 bnlg2086 1 13 csu61b 1 14 bnlg1057 1 15 umc1122 1 16 Bnlg615_U 1 17 umc1128 1 18 umc166b 1 19 dupssr12 1 20 phi011 1 21 bnlg1720 1 22 umc106a 1 23 umc147b 1 24 umc1111_P 1 25 bnlg2331 1 26 bnlg2123 1 27 bnl6.32 2 1 phi402893 2 2 bnlg1297 2 3 bnlg2042 2 4 umc44b 2 5 csu40 2 6 umc135 2 7 csu54a 2 8 umc55a 2 9 umc14b 2 10 csu154a 2 11 umc150b 2 12 umc1551 2 13 umc36a 2 14 csu109a 3 1 umc32a 3 2 phi104127 3 3 bnlg1325 3 4 bnlg1447 3 5 umc92a 3 6 bnlg1019a 3 7 phi053 3 8 bnlg420 3 9 umc1307 3 10 Phi073_U 3 11 Bnlg1449_U 3 12 bnl10.24a 3 13 unknown1 3 14 umc3b 3 15 umc16a 3 16 bnlg1108_P 3 17 umc63a 3 18 bnlg1182 3 19 bnlg1754 4 1 umc1017 4 2 umc1294 4 3 phi021 4 4 umc1550 4 5 umc1652 4 6 bnlg490 4 7 csu100 4 8 umc156a 4 9 bnlg2291 4 10 umc19 4 11 mmc0341 4 12 umc133a 4 13 umc15a 4 14 csu11b 4 15 npi593a 4 16 bnlg589 4 17 umc1720_P 4 18 bnlg1337 4 19 phi019 4 20 phi006 5 1 bnl8.33 5 2 npi409 5 3 umc147a 5 4 umc90 5 5 umc107b 5 6 Bnlg105_U 5 7 bnlg1046 5 8 umc166a 5 9 bnl6.22 5 10 csu36b 5 11 DupSSR10_U 5 12 bnl5.71a 5 13 umc1155_P 5 14 npi237 5 15 umc54 5 16 bnlg1346 5 17 bnlg118 5 18 umc1225 5 19 umc104b 5 20 bnlg1885 6 1 umc85a 6 2 bnlg426 6 3 umc36c 6 4 umc1572_P 6 5 Bnlg2191_U 6 6 bnlg2151 6 7 umc1887 6 8 umc65a 6 9 umc1014 6 10 bnlg1922 6 11 umc1413_P 6 12 mmc0241 6 13 umc1424_P 6 14 umc36 6 15 umc39 6 16 bnlg1740 6 17 umc2059 7 1 csu13 7 2 bnlg1094 7 3 umc1393 7 4 bnlg1808 7 5 bnl15.21 7 6 bnlg339 7 7 bnlg155 7 8 bnlg1805 7 9 bnl14.07 7 10 umc1125 7 11 phi082 7 12 umc1799 8 1 npi114a 8 2 umc1327 8 3 npi110a 8 4 umc103a 8 5 bnlg669 8 6 umc1858 8 7 umc1562_P 8 8 umc48a 8 9 asg52a 8 10 umc150a 8 11 umc1384 8 12 umc7 8 13 bnlg1056 8 14 umc39b 9 1 bnlg1272 9 2 umc113a 9 3 umc1170_P 9 4 umc105a 9 5 umc81 9 6 bnl8.17 9 7 umc1231 9 8 umc1733 9 9 bnlg1588 9 10 bnlg1375 9 11 umc1137 10 1 phi118 10 2 npi285a 10 3 umc1337_P 10 4 umc130 10 5 bnlg1079 10 6 umc1115 10 7 npi232a 10 8 umc44a 10 9 umc182 10 10 bnlg236 10 11 bnl7.49a 10 12 bnlg1450 10 13 umc1038 -e MarkerNames Names of the Chromosomes -b ChromosomeNames 1 Ch1 2 Ch2 3 Ch3 4 Ch4 5 Ch5 6 Ch6 7 Ch7 8 Ch8 9 Ch9 10 Ch10 -e ChromosomeNames